View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_high_4 (Length: 437)
Name: NF0674_high_4
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 29 - 429
Target Start/End: Complemental strand, 700255 - 699855
Alignment:
| Q |
29 |
actcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700255 |
actcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcag |
700156 |
T |
|
| Q |
129 |
gcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcagg |
228 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700155 |
gcaaaacccatgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcagg |
700056 |
T |
|
| Q |
229 |
aaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700055 |
aaaaggcgataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaa |
699956 |
T |
|
| Q |
329 |
ggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcatat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
699955 |
ggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaagaatcaaaataagggttcatat |
699856 |
T |
|
| Q |
429 |
c |
429 |
Q |
| |
|
| |
|
|
| T |
699855 |
c |
699855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 429
Target Start/End: Original strand, 23261874 - 23262268
Alignment:
| Q |
35 |
gagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatgctccatattttccatcaggcaaaa |
134 |
Q |
| |
|
||||| || ||||||||||| ||||| ||||| ||||| | | |||||| ||||| |||||| | || ||||| || |||||||| ||||||||||| | |
|
|
| T |
23261874 |
gagtgattttggtaagcaagattaagcgctgccctatgcgctacaacaaacacctccgtttcattaatctcaaaagccccatatttcccatcaggcaaca |
23261973 |
T |
|
| Q |
135 |
tccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaagagccttaaatttatcaggaaaagg |
234 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| || | | ||||||| || ||||||||||| |
|
|
| T |
23261974 |
cccaagcatttgtttgaccatacatagtctcaggcctcaacgtcgccgcagcaagaaaaaccttctttccctccaaaaccttaaacttctcaggaaaagg |
23262073 |
T |
|
| Q |
235 |
cgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagcacacggttgtccatccaaaggcgaa |
334 |
Q |
| |
|
|| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
23262074 |
agaaaccacctccatcttaataatcgtatactcttgcggctgaacaccttcaccactagccctatcatgatccgcacaaggctgtccatccaatggcgaa |
23262173 |
T |
|
| Q |
335 |
aaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaatcaaaataagggttcatatc |
429 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| || | | |||||| |||||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
23262174 |
aaaactgtatacctaacatccttaacaaccttaccagacgccttcaacttcctcatatgccacctaacaaaagcatcaaaataaggattcatatc |
23262268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 672 times since January 2019
Visitors: 4390