View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_12 (Length: 432)
Name: NF0674_low_12
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 101 - 432
Target Start/End: Complemental strand, 33484758 - 33484427
Alignment:
| Q |
101 |
ccaccctcctcttcaaatggtcgaaactccactaactcctctcgaaggtcatccaataaatgttcctcccacacaaacaaccgcctccgccattcgaagt |
200 |
Q |
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| T |
33484758 |
ccaccctcctcttcgaatggtcgaaaccccactaactcctctcgaaggtcatccaataaatgttcctcccacacaaacaaccgcctccgccattcgaagt |
33484659 |
T |
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| Q |
201 |
tccacaccacatttggactaggctctccaaccatgtcccccacactctcccctttttgatttgaagtagaaaacaatctcgggtatttatcccgaaaagg |
300 |
Q |
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| T |
33484658 |
tccacaccacattcagactaggctctccaaccatgtcccccacactctcccctttttgatttgaagtagaaaacaatctcggatatttatcccgaaaagg |
33484559 |
T |
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| Q |
301 |
cataccacccctccaagcatccttccaaaagctaggttgccttccatttcccacacacctaaccaatgccgagttaaaccacgaaaccccaccaaactcc |
400 |
Q |
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| T |
33484558 |
cataccacccctccaagcatccttccaaaagctacttttccatccatttcccacacacctaaccaatgccgagttaaaccacgaaaccccaccaaactcc |
33484459 |
T |
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| Q |
401 |
tccaaacttacaatatccttccaccaagatga |
432 |
Q |
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| T |
33484458 |
tccaaacttacaatatccttccaccaagatga |
33484427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 430
Target Start/End: Complemental strand, 41450287 - 41450101
Alignment:
| Q |
244 |
actctcccctttttgatttgaagtagaaaacaatctcgggtatttatcccgaaaaggcataccacccctccaagcatccttccaaaagctaggttgcctt |
343 |
Q |
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| T |
41450287 |
actctcctctttttgatttgagatagaaaacaatctcgtatatttatcctgaaaaggcacttcacccctccaagtatcattccaaaaactagttttcatt |
41450188 |
T |
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| Q |
344 |
ccatttcccacacacctaaccaatgccgagttaaaccacgaaaccccaccaaactcctccaaacttacaatatccttccaccaagat |
430 |
Q |
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| T |
41450187 |
ccgttacccacacccctaaccacttcggagttaaaccacgaaaccccaccaaagtcctccaaggtaactatatccttccaccaagat |
41450101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 41450451 - 41450326
Alignment:
| Q |
81 |
tcctctaacctccacctccacc-accctcctcttcaaatggtcgaaactccactaactcctctcgaaggtcatccaataaatgttcctcccacacaaaca |
179 |
Q |
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| T |
41450451 |
tcctccaacctccacctccacccatcctcatcttcacctaaccgaaactccacaaggtcgtctctaaggtcttccaataattgttcctcccacacaaata |
41450352 |
T |
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| Q |
180 |
accgcctccgccattcgaagttccac |
205 |
Q |
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| T |
41450351 |
atcgtctccaccaaatgaagttccac |
41450326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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