View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_13 (Length: 415)
Name: NF0674_low_13
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_13 |
 | |
|
| [»] chr3 (34 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0425 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 76 - 415
Target Start/End: Original strand, 6244386 - 6244725
Alignment:
| Q |
76 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
175 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||| || ||||||||||||||||||| ||||||| | |||||| |||||||||||||||| | |
|
|
| T |
6244386 |
atcagtcagcatctcaaggttgattaaccctctcatctcctttggcatcttcttaatatgggtgcctttcaaattaagatgacgtaaattgatgagtttg |
6244485 |
T |
|
| Q |
176 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
275 |
Q |
| |
|
|||||| || ||||||||| | ||||||||| |||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6244486 |
caaaaatttggcgggagctcaagtagtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
6244585 |
T |
|
| Q |
276 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
375 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
6244586 |
cggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaaccattgaaagataacttccgtaaata |
6244685 |
T |
|
| Q |
376 |
ttgtagtcttgaatataaattatactgcacgttggtggat |
415 |
Q |
| |
|
||||| ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6244686 |
ttgtactcttgaatacaaattatactgcacattggtggat |
6244725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 69 - 415
Target Start/End: Complemental strand, 13271496 - 13271150
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| | |||||| || ||||||||||||||||||| ||||||| | |||||| ||||||||||| |
|
|
| T |
13271496 |
caacaaaatcagtcagcatctcaagattgattaattcacttatctcctttggcatcttcttaatatgcgtgcctttcaaattaagatgacgtaaattgat |
13271397 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | |||||| || ||||||||| | ||||||||| |||| || |||||||||| |||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
13271396 |
gagtttgcaaaaatttggcgggagctcaagtagtttaaaacattctttcagcaagagcgtatgcaaattatacaacatacaaatggaatcaggtaagctt |
13271297 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13271296 |
gtaatctcggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctgagagattgcaacctttgaaagataacatcc |
13271197 |
T |
|
| Q |
369 |
tcaaatattgtagtcttgaatataaattatactgcacgttggtggat |
415 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
13271196 |
gtaaatattgtagtcttgaatacaaattatactgcacattggtggat |
13271150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 76 - 384
Target Start/End: Original strand, 6141379 - 6141687
Alignment:
| Q |
76 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
175 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||| | |||||| |||||||||| ||||| | |
|
|
| T |
6141379 |
atcagtcagcatctcaggattgattaaccctcttatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgacgagtttg |
6141478 |
T |
|
| Q |
176 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
275 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||| || |||||| |||| |||||| |||| | | |||||||||||||||||||||||||||| |
|
|
| T |
6141479 |
caaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaattatacagcttacaaatggaattaggtaagcttgtaatct |
6141578 |
T |
|
| Q |
276 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
375 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
6141579 |
ccgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaacatccgcaaata |
6141678 |
T |
|
| Q |
376 |
ttgtagtct |
384 |
Q |
| |
|
|| |||||| |
|
|
| T |
6141679 |
ttttagtct |
6141687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 69 - 384
Target Start/End: Original strand, 6167977 - 6168292
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||| || ||||||||||||| ||||| ||||||| | |||||| ||||||||||| |
|
|
| T |
6167977 |
caacaaaatcagtcagcatctcaagattgattaatactcttatctcctttggcatcttcttgatatgtgtgcctttcaaattaagatgacgtaaattgat |
6168076 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | ||||| ||| ||||||||||||||||||||||| |||| || ||||||||||| |||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
6168077 |
gagtttgccaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagcgtatgcaaattatacagcatacaaatggaattaggtaagctt |
6168176 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| | | |
|
|
| T |
6168177 |
gtaatgtcggtgtaagaaaggtctagatatcgtagaagctttaaatttcttatctcatcagctagctctaagagattgcaaccattgaaagacaaccttc |
6168276 |
T |
|
| Q |
369 |
tcaaatattgtagtct |
384 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
6168277 |
gcaaatattttagtct |
6168292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 69 - 412
Target Start/End: Original strand, 6899174 - 6899517
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||||| |||| | ||||||||||| | ||||||||||||| || |||||| |||| ||||| |
|
|
| T |
6899174 |
caacaaaatcagtcagcatctcaagattgtttaaccctcctatcttcattggcatcttcattatatgagtgccttgcagattaagatgacgtagattgac |
6899273 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||| |||||| |||||| || | |||||| |||| ||| |||||||||| |||||||||| |
|
|
| T |
6899274 |
gagtttgcaaaaatctgaagggagctcagtcagtttaaaacaaccttgcagtaagagtgtctgcaaattatacagcatacaaatggaatcaggtaagctt |
6899373 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||| || |
|
|
| T |
6899374 |
gcaatctcggtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctatgagattgcaaccagagaaagacaacaccc |
6899473 |
T |
|
| Q |
369 |
tcaaatattgtagtcttgaatataaattatactgcacgttggtg |
412 |
Q |
| |
|
|||||||| || ||||||| | ||||||| |||||| |||||| |
|
|
| T |
6899474 |
gcaaatattttactcttgaaaacaaattatgctgcacattggtg |
6899517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 69 - 397
Target Start/End: Original strand, 6916187 - 6916515
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| || |||||| |||||| |||| |
|
|
| T |
6916187 |
caacaaaatcagtcagcatctcaagattgtttaaccctcctatttttgttggcatcttcttaatatgagtgcctttcagattaagatggcgtaagttgac |
6916286 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||||| |||| |||| ||||||||| || | ||||| || | ||| |||| |||| | ||||||||| |
|
|
| T |
6916287 |
gagtttgccaaaatctaaagggagctcagtcaatttccaacattcttccaataagagtgtctgtaaattatatatcatacaaacggaaatcggtaagctt |
6916386 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
6916387 |
gtaatctcagtgtacgaaagatctagatagcgcagaagctttaaatttcttatctcatctgctagctccgagagactgcaaccatggaaagataacatcc |
6916486 |
T |
|
| Q |
369 |
tcaaatattgtagtcttgaatataaatta |
397 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
6916487 |
gcaaatattgtagtcttgaatacaaatta |
6916515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 69 - 415
Target Start/End: Original strand, 6258288 - 6258634
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| | |||||| | ||||||||| |
|
|
| T |
6258288 |
caacaaaatcagtcagcatctcaagattgattaattctcttatcttctttggcatcttcttaatatgcgtgcctttcaaattaagatgacataaattgat |
6258387 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||| | || ||||| ||| ||||||||||||| ||||||||| |||| || |||||| |||| |||||| |||||||| |||||||||| |||||| ||| |
|
|
| T |
6258388 |
gagattgtgaaaatttgatgggagctcagtcagtttaaaacattcttccagtaagagtgtatgcaaattatacaacatacaaatggaatcaggtaaactt |
6258487 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |||||| || |||| |
|
|
| T |
6258488 |
gtaatctcggtgtaagaaaggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctaagagattgcaaccagagaaagacaatatcc |
6258587 |
T |
|
| Q |
369 |
tcaaatattgtagtcttgaatataaattatactgcacgttggtggat |
415 |
Q |
| |
|
|||||||| |||||||||| | ||| | | |||||| ||||||||| |
|
|
| T |
6258588 |
gcaaatattttagtcttgaaaacaaactctgctgcacattggtggat |
6258634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 69 - 385
Target Start/End: Original strand, 6264771 - 6265087
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||| ||||| |||||||| || ||||||||||| ||| || ||||||||||||||||||| ||||||| | |||||| |||||||||| |
|
|
| T |
6264771 |
caacaaaatcggtcagcatctcaaggtttattaaccctctcatctcctttggcatcttcttaatatgtgtgcctttcaaattaagatgacgtaaattgac |
6264870 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | |||||| ||| ||||||||||||||||||||||| |||| || |||||| |||| |||| | |||| | | ||||||||||||||||||||| |
|
|
| T |
6264871 |
gagtttgcaaaaatttgatgggagctcagtcaatttaaaacattcttccagtaagagggtatgcaaactatacagcttacaaatggaattaggtaagctt |
6264970 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcc |
368 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| | |
|
|
| T |
6264971 |
gtaatctctgtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagctagctctaagagattgcaacccgagaaagacaacattc |
6265070 |
T |
|
| Q |
369 |
tcaaatattgtagtctt |
385 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
6265071 |
gcaaatattttagtctt |
6265087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 69 - 322
Target Start/End: Original strand, 6237839 - 6238092
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||| ||| |||| || ||||||||||||||||||| || |||| | |||||| ||||||||||| |
|
|
| T |
6237839 |
caacaaaatcagtcagaatctcaagattgaataattctcgtatctcctttggcatcttcttaatatgcgttcctttcaaattaagatgacgtaaattgat |
6237938 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
|||| | |||||| ||| ||||||| ||||||||||||||| |||| | ||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6237939 |
aagtttgcaaaaatttgatgggagcttagtcaatttaaaacattcttccggtaagagcgtatgcaaattatacaacatgcaaatggaattaggtaagctt |
6238038 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatc |
322 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6238039 |
gtaatttcagtgtaagaaaggtctagatagcacaaaagctttaaatttcttatc |
6238092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 117 - 412
Target Start/End: Complemental strand, 6722974 - 6722679
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||||||| ||||| ||| | ||||||||| |||| |||||||||||| || |||| |
|
|
| T |
6722974 |
ttggcatcttcttaatatgagtgcctttcagattaagataacgtaaattgacgagtttgtagatatctgaaggtagcttagtcaatttaaagcactcttc |
6722875 |
T |
|
| Q |
217 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
316 |
Q |
| |
|
||||||||| || | |||||| || | ||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6722874 |
caataagagtgtctgcaaattatatagcatacaaatggaattaggtaagcttacaatgtcagtgtaggaaaggtctagatagcgcaaaagctttaaattc |
6722775 |
T |
|
| Q |
317 |
cttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaatattgtagtcttgaatataaattatactgcacgttggtg |
412 |
Q |
| |
|
||||||||||| || ||||| |||| ||||||||| |||||| | ||||| |||||||| |||||||||| | ||||||| |||||| |||||| |
|
|
| T |
6722774 |
cttatctcatcggatagctctaagaggttgcaaccagagaaagacagcatccgcaaatattttagtcttgaaaacaaattatgctgcacattggtg |
6722679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 117 - 405
Target Start/End: Complemental strand, 6592248 - 6591960
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||| || ||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
6592248 |
ttggcatcttcttaatatgagtgcctttcagattaagatggcgcaaattgatgagtttgtgaaaatctgaagggagttcggtcaatttaaaacattcttc |
6592149 |
T |
|
| Q |
217 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
316 |
Q |
| |
|
|||||||| || | |||||| |||| | | |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
6592148 |
caataagaatgtttgcaaattatacagcgtacaaatggaattaggtaagcttgcaatctcagttttagaaaggtctagatagcgcagaagctttaaattt |
6592049 |
T |
|
| Q |
317 |
cttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaatattgtagtcttgaatataaattatactgcac |
405 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | || ||||||| |||||||| || ||||||| | ||||||| |||||| |
|
|
| T |
6592048 |
cttatctcatcatctagctttacgagattgcaaccagaaagggacaacatccgcaaatattttattcttgaaaacaaattatgctgcac |
6591960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 69 - 352
Target Start/End: Original strand, 7749088 - 7749371
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| |||||| ||||| | |||||||||||||||||||||||| | || |||||| ||||||||||| |
|
|
| T |
7749088 |
caacaaaatcagtcagcatctcaatattttttaacctacttatattcggtggcatcttcttaatatgagtgccgtttagattaagatgacgtaaattgat |
7749187 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||||| | ||||||||||||| ||||||| |||| | ||||| | || ||| ||||| || | |||||| |||| ||| ||||||||||| ||||||||| |
|
|
| T |
7749188 |
gagtttgcaaaaatctgaaggcagctcagccaatctgaaacattgttccaacaagagtgtctgcaaattatacagcatacaaatggaattgggtaagctt |
7749287 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaacca |
352 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
7749288 |
gcaatctcagtgtgagaaaggtctagatagcgcagaagctttaaatttcttatctcatcggctagctctacgagattgcaacca |
7749371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 69 - 328
Target Start/End: Original strand, 6881602 - 6881861
Alignment:
| Q |
69 |
caacaatatcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgat |
168 |
Q |
| |
|
|||||| ||||||||| |||||||||||| |||||| | |||| |||||||||||||||||||||||||| || |||||| |||||| |||| |
|
|
| T |
6881602 |
caacaaaatcagtcagcatctcaagattgtttaaccgttctatctttgttggcatcttcttaatatgagtgcctgtcagattaagatgacgtaaactgat |
6881701 |
T |
|
| Q |
169 |
gagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagctt |
268 |
Q |
| |
|
||| | | ||||||||| || || ||| |||||| ||||| |||| ||||||||| || | ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
6881702 |
gagcttgcaaaaatctgttggaagttcaagcaatttgaaacattcttccaataagagtgtctgtaaattatacaacatacaaatggaattaggtaagctt |
6881801 |
T |
|
| Q |
269 |
gtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6881802 |
gcaatctcagtgtgcgaaaggtccagatagcgcagaagctttaaatttcttatcccatca |
6881861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 5262911 - 5263100
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
216 |
Q |
| |
|
||||||||||| ||| |||||| ||| || |||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||| | | || | |
|
|
| T |
5262911 |
ttggcatcttcgagataagagtgctttctagattaagatggcgtaaattgacgagtttataaaaatctgaagggagctccgtcaatttacatc---ctag |
5263007 |
T |
|
| Q |
217 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctt |
309 |
Q |
| |
|
||||||||| || | |||||| ||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5263008 |
caataagagtgtctgcaaattatacaacacataaatggaatcaggtaggcttgtaatcccagtgtaagaaaggtctagataacgcagaagctt |
5263100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 345
Target Start/End: Original strand, 5279828 - 5280012
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||||||||||| || | | || |||||||||| || | |||||| ||||||| |||||||||| |
|
|
| T |
5279828 |
cgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaatctacatc---ctagcaataagagtgtctgcaaattatacaacacacaaatggaat |
5279924 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagatt |
345 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| | |||||||||||| || |||||||| |||| ||||| |||||||| |
|
|
| T |
5279925 |
caggtaggcttgtaattccagtgtaagaaaggtctagataacacagaagctttaagttgcttatctcgtcagctagctcggagagatt |
5280012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 158 - 328
Target Start/End: Complemental strand, 6480846 - 6480679
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | | | ||||||| |||| || | |||||| |||||||| |||||| || |
|
|
| T |
6480846 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattcacacc---cttgcaacaagattgtttgcaaattatacaacatacaaatgctat |
6480750 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
6480749 |
caggtaagcttgtaatctcagtgaaagaaaggtcaagatagcgcaaaagttttatattgcttatctcatca |
6480679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 160 - 327
Target Start/End: Original strand, 6735127 - 6735294
Alignment:
| Q |
160 |
taaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaatta |
259 |
Q |
| |
|
|||||||| ||||| | |||||| |||||||||||||||||||| | |||| ||| || ||||| || | ||||| |||||||| ||||||| || | |
|
|
| T |
6735127 |
taaattgacgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaaatggtatca |
6735226 |
T |
|
| Q |
260 |
ggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
327 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
6735227 |
ggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatc |
6735294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 388
Target Start/End: Complemental strand, 6555332 - 6555102
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | |||| |||| || ||||| || | |||||| |||||||| ||||||| || |
|
|
| T |
6555332 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgataacagtcttttaacaagagtgtttgcaaattatacaacatacaaatggtat |
6555233 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaa |
357 |
Q |
| |
|
|||||||||| |||| ||||||| | |||||||||||| |||| ||| |||| |||| ||||||||| ||||| ||||||| |||||| | || |
|
|
| T |
6555232 |
caggtaagcttttaataccagtgtatgtaaggtctagataacgcaaaagttttagctttcctatctcatccacaagctctgagagatgccaaccactaaa |
6555133 |
T |
|
| Q |
358 |
agataacatcctcaaatattgtagtcttgaa |
388 |
Q |
| |
|
| || ||||| |||| ||| |||||||||| |
|
|
| T |
6555132 |
tgttagcatccgcaaaaattttagtcttgaa |
6555102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 388
Target Start/End: Complemental strand, 6521026 - 6520796
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | || ||| || ||||| || | ||||| |||| ||| ||||||| || |
|
|
| T |
6521026 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgatggcagccttttaacaagagtgtttgtaaattatacagcatacaaatggtat |
6520927 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaa |
357 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||||||| ||||||||||| ||||| |||||| ||||||| | || |
|
|
| T |
6520926 |
caggtaagcttgcaatcttattgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcatccacaagctctgagagaaggcaaccactaaa |
6520827 |
T |
|
| Q |
358 |
agataacatcctcaaatattgtagtcttgaa |
388 |
Q |
| |
|
| || ||||| |||| ||| |||||||||| |
|
|
| T |
6520826 |
tgttagcatccgcaaacattttagtcttgaa |
6520796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 328
Target Start/End: Original strand, 6946440 - 6946610
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||| ||||| | |||| |||||||||||| ||||| || ||| ||||||||||||| || | |||||| |||||||| ||||| |||| |
|
|
| T |
6946440 |
cgtaaattgacgagttttgagaaatttgaagggagctctgtcaacttcctacagccttgcaataagagtgtttgcaaattatacaacatacaaatagaat |
6946539 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
6946540 |
cgggtaaccttgtaatattagtgtgagaaaggtctagataacgcaaaagctttaaattgcttatctcatca |
6946610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 6850245 - 6850304
Alignment:
| Q |
255 |
aattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6850245 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
6850304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 336
Target Start/End: Complemental strand, 8569865 - 8569646
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
216 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||| |||||||||| |||| |||||||| ||||||||||| ||||||| | |||| |||| |
|
|
| T |
8569865 |
ttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaacattcttc |
8569766 |
T |
|
| Q |
217 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
316 |
Q |
| |
|
||||| || || | ||||| |||||| | |||||||||| ||| || ||| ||||||| ||| || || ||||||||||||| |||||||||||| |
|
|
| T |
8569765 |
caatattagtgtttgtaaattatacaacttacaaatggaatcaggcaaccttttaatctctgtgcgagtcagatctagatagcgcaaaagctttaaattg |
8569666 |
T |
|
| Q |
317 |
cttatctcatcagagagctc |
336 |
Q |
| |
|
| ||||||||| || ||||| |
|
|
| T |
8569665 |
catatctcatctgacagctc |
8569646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 8588978 - 8589071
Alignment:
| Q |
233 |
aaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcat |
326 |
Q |
| |
|
||||| |||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
8588978 |
aaattatacaacatacaaatggtatcaggtaagcttgtaatcaaagtgtaagaaaggtctagataacgcaaaagttttaaattgcttatctcat |
8589071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 328
Target Start/End: Original strand, 8453822 - 8453992
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||| ||||| | |||||| |||||||||||| ||||||| | |||| ||| || ||||| || | |||||| | |||||| ||||||| || |
|
|
| T |
8453822 |
cgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagcaagagtgtttgcaaattatgcaacatacaaatggtat |
8453921 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
|||||| || |||| |||||||| ||||||||||| |||| ||| |||||||| |||||||||||| |
|
|
| T |
8453922 |
caggtaatatttcaatccatgtgtaagagaggtctagataacgcaaaagttttaaattgcttatctcatca |
8453992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 6850239 - 6850199
Alignment:
| Q |
274 |
ctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
314 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6850239 |
ctcagtgtaagaaaggtctagataccgcagaagctttaaat |
6850199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 327
Target Start/End: Original strand, 5297859 - 5298065
Alignment:
| Q |
118 |
tggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgc |
217 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| ||||||| ||| ||||| |||||||||| |||| | |||||||| | ||||| | |
|
|
| T |
5297859 |
tggcatcttctttatatgagtgccttttaggataagatggcgtaaactgacgagtttgtaaaaatctaaaggaaactcagtcagt---ggacaatgaatc |
5297955 |
T |
|
| Q |
218 |
aataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttc |
317 |
Q |
| |
|
|||| | || |||||||| |||||| |||| ||||||| |||||||||||| | | | || |||||| || ||||| |||||||||||||| || | |
|
|
| T |
5297956 |
aatatcaatgtttccaaattatacaacgtgcagatggaatcaggtaagcttgttagcccggttcgagaaagatcaagataacgcagaagctttaagttgc |
5298055 |
T |
|
| Q |
318 |
ttatctcatc |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
5298056 |
ttatctcatc |
5298065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 6839815 - 6839729
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatt |
203 |
Q |
| |
|
||||||||||||| |||| | ||||||||| |||||| ||||||| ||| |||| |||||||| ||||||||| |||||||||| |
|
|
| T |
6839815 |
ttggcatcttctttatattacagccttcaagattaagatggcgtaaactgactagtttgtaaaaatttgaagggagttcagtcaatt |
6839729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 328
Target Start/End: Original strand, 5267183 - 5267391
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttg |
216 |
Q |
| |
|
||||||||||||| |||||||||| ||| || | |||| ||||| || | |||| ||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
5267183 |
ttggcatcttctttatatgagtgcattccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaagggagctcggtcaatg---aacaatatgc |
5267279 |
T |
|
| Q |
217 |
caataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaattt |
316 |
Q |
| |
|
||||| || || | ||||| |||| | |||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||| |||||||||||| |
|
|
| T |
5267280 |
caatagtagtgtctgtaaattatacaggttacaaatggaatcaggcaaccttttaatctttgtgagagacaggtctagataacgcaaaagctttaaattg |
5267379 |
T |
|
| Q |
317 |
cttatctcatca |
328 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5267380 |
cttatctcatca |
5267391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 6527766 - 6527721
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatt |
203 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
6527766 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaatt |
6527721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 5249338 - 5249381
Alignment:
| Q |
159 |
gtaaattgatgagttcgtaaaaatctgaagggagctcagtcaat |
202 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
5249338 |
gtaaattgctaagtttgtaaaaatctgaagggagctcagtcaat |
5249381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 5249454 - 5249504
Alignment:
| Q |
278 |
gtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||| |||| ||||||| |
|
|
| T |
5249454 |
gtgtaagataggtctagataacgcaaaagctttaaattgcttacctcatca |
5249504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 4389842 - 4389761
Alignment:
| Q |
117 |
ttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcgtaaaaatctgaagggagctcagt |
198 |
Q |
| |
|
||||||||||||| ||| |||||||||| || | |||| ||||| || | |||| |||||||||||||||||||||||| |
|
|
| T |
4389842 |
ttggcatcttctttataagagtgccttccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaagggagctcagt |
4389761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 4389714 - 4389634
Alignment:
| Q |
248 |
caaatggaattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatca |
328 |
Q |
| |
|
|||||||||| ||| || ||| |||||| ||| ||| ||||||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
4389714 |
caaatggaatcaggcaaccttttaatctttgtgagagataggtctagataacgcataagctttaaattgcttatcttatca |
4389634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 6449529 - 6449485
Alignment:
| Q |
283 |
agaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
327 |
Q |
| |
|
||||||||||||||| || | |||||||||||| ||||||||||| |
|
|
| T |
6449529 |
agaaaggtctagataacgtaaaagctttaaattgcttatctcatc |
6449485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 76 - 415
Target Start/End: Complemental strand, 35141305 - 35140968
Alignment:
| Q |
76 |
atcagtcagtatctcaagattgattaaccctcttatcccccttggcatcttcttaatatgagtgccttcaaggttaagagtgcgtaaattgatgagttcg |
175 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||| | |||||| | |||||||||||||| | |
|
|
| T |
35141305 |
atcagtcggcatctcaagattgattaaccctctcatctcctttggcat-ttcttaatatgtgtgcctttcaaattaagatgacataaattgatgagtttg |
35141207 |
T |
|
| Q |
176 |
taaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaattaggtaagcttgtaatct |
275 |
Q |
| |
|
||||| ||| ||||||||| || ||||||||| |||| || ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35141206 |
cgaaaatttgatgggagctcaatcggtttaaaacattcttccagtaagagcgtatgcaaattatacaacatacaaatggaattaggtaagcttgtaatct |
35141107 |
T |
|
| Q |
276 |
cagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatcagagagctccgagagattgcaaccattgaaagataacatcctcaaata |
375 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| |||| |||||| |||| ||||| ||||||||||||| | |||||| ||||||| |||||| |
|
|
| T |
35141106 |
cggtgtaagaaaggtctagatagcgcataagctttaagtttcctatctcttcagctagctctgagagattgcaacaagagaaagacaacatccgcaaata |
35141007 |
T |
|
| Q |
376 |
ttgtagtcttgaatataaattatactgcacgttggtggat |
415 |
Q |
| |
|
|| |||||||||| | ||| | | ||||||||||||||| |
|
|
| T |
35141006 |
tt-tagtcttgaaaacaaactctgatgcacgttggtggat |
35140968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 327
Target Start/End: Complemental strand, 8371 - 8202
Alignment:
| Q |
158 |
cgtaaattgatgagttcgtaaaaatctgaagggagctcagtcaatttaaaacaatcttgcaataagagcgtatccaaattgtacaacatgcaaatggaat |
257 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||||||||||| | |||| ||| || ||||| || | ||||| |||||||| ||||||| || |
|
|
| T |
8371 |
cgtaaattgatgagtttggaaaaatttgaagggagctcagtcaattgacgacaaccttttaacaagagtgtttgtaaattatacaacatacaaatggtat |
8272 |
T |
|
| Q |
258 |
taggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaatttcttatctcatc |
327 |
Q |
| |
|
|||||||||| |||||| |||||| |||||||||||||| |||| ||| |||||||| ||||||||||| |
|
|
| T |
8271 |
caggtaagcttctaatcttagtgtatgaaaggtctagataacgcaaaagttttaaattgcttatctcatc |
8202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 13353 - 13412
Alignment:
| Q |
255 |
aattaggtaagcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13353 |
aattaggtatgcttgtaatctcagtgtaagaaaggtctagatagcgcagaagctttaaat |
13412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 13344 - 13307
Alignment:
| Q |
277 |
agtgtaagaaaggtctagatagcgcagaagctttaaat |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13344 |
agtgtaagaaaggtctagataccgcagaagctttaaat |
13307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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