View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_14 (Length: 408)

Name: NF0674_low_14
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_14
NF0674_low_14
[»] chr3 (2 HSPs)
chr3 (166-331)||(13219260-13219425)
chr3 (272-331)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (167-327)||(238285-238445)
scaffold0002 (260-327)||(240602-240669)
[»] chr4 (1 HSPs)
chr4 (236-331)||(18176963-18177058)
[»] chr8 (2 HSPs)
chr8 (19-130)||(29276066-29276177)
chr8 (121-165)||(9032725-9032769)
[»] chr5 (3 HSPs)
chr5 (272-331)||(39047942-39048001)
chr5 (121-165)||(26702828-26702872)
chr5 (121-165)||(26972561-26972605)
[»] chr7 (1 HSPs)
chr7 (240-328)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (272-331)||(15664-15723)
[»] scaffold0014 (2 HSPs)
scaffold0014 (99-165)||(82876-82942)
scaffold0014 (119-165)||(86994-87040)
[»] chr2 (1 HSPs)
chr2 (104-165)||(18738912-18738973)
[»] chr1 (1 HSPs)
chr1 (286-331)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 166 - 331
Target Start/End: Complemental strand, 13219425 - 13219260
Alignment:
Q  166 tgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaata 265  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13219425 tgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaata 13219326  T
Q  266 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219325 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  272 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 167 - 327
Target Start/End: Original strand, 238285 - 238445
Alignment:
Q  167 gaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaatac 266  Q
    ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| |    
T  238285 gaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattc 238384  T
Q  267 cgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 327  Q
    |||||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  238385 cgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  260 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 327  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  236 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 29276177 - 29276066
Alignment:
Q  19 cattttcaggctaagcaattcttttaccatttatctagcaggactgcaaataaattgactaacaagtttcaacaaataattaaattaaaatcctcaagat 118  Q
    |||||||| | | |||||||| ||| ||||||||||||||||| |||||||||||||| |||||  ||||||||||| ||||||  |||||||| |||||    
T  29276177 cattttcacgttgagcaattcctttcccatttatctagcaggagtgcaaataaattgagtaacatatttcaacaaatgattaaacgaaaatccttaagat 29276078  T
Q  119 tgttgtataatt 130  Q
    ||||||| ||||    
T  29276077 tgttgtaaaatt 29276066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 9032769 - 9032725
Alignment:
Q  121 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    ||||| ||||| ||| ||||| |||||||||||||||||||||||    
T  9032769 ttgtaaaattagatgtggaattatcacaaataagaaattaaagag 9032725  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  272 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 26702828 - 26702872
Alignment:
Q  121 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  26702828 ttgtataattagatgtggaattatcacaaataagaaattaaagag 26702872  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 26972561 - 26972605
Alignment:
Q  121 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  26972561 ttgtataattagatgtggaattatcacaaataagaaattaaagag 26972605  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  240 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 328  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  272 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 82942 - 82876
Alignment:
Q  99 taaattaaaatcctcaagattgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    |||||||||||||||||||||||||||||||||  || | ||| |||||| ||||||||||||||||    
T  82942 taaattaaaatcctcaagattgttgtataattaggtgtgcaattatcacagataagaaattaaagag 82876  T

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Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 87040 - 86994
Alignment:
Q  119 tgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    |||||||||||||  || ||||| |||||||||||||||||||||||    
T  87040 tgttgtataattaggtgtggaattatcacaaataagaaattaaagag 86994  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 18738912 - 18738973
Alignment:
Q  104 taaaatcctcaagattgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 165  Q
    ||||||||||| | ||||||||||||||  || ||||| ||| |||||||||||||||||||    
T  18738912 taaaatcctcacggttgttgtataattaggtgtggaattatctcaaataagaaattaaagag 18738973  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  286 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 331  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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