View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_18 (Length: 388)
Name: NF0674_low_18
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 156 - 365
Target Start/End: Original strand, 44640955 - 44641167
Alignment:
| Q |
156 |
atttgtataatttaaagctgaagaggcccatagtatttgtttggaatccctcccgtgttgagtaagttgttaatcaatttaattccattccttttcttga |
255 |
Q |
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| T |
44640955 |
atttgtataatttaaagctgaagaggcccatagtatttgtttggaatccctcccgtgtcgagtaagttgttaatcaatttaattccattccttttcttga |
44641054 |
T |
|
| Q |
256 |
ggggtaatccactactctatccaatgtaatccatg---annnnnnnngacaaaacgacaaataaatcaccgagttgttgtttttcaagtcgctttttatt |
352 |
Q |
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| T |
44641055 |
ggggtaatccactactctatccaatgtaatccatgattattttttttgacaaaacgacaaataaatcaccgagttgttgtttttcaagttgctttttatt |
44641154 |
T |
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| Q |
353 |
gacccacccacag |
365 |
Q |
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| T |
44641155 |
gacccacccacag |
44641167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 44640829 - 44640901
Alignment:
| Q |
29 |
agttagagtttgaactttaaatttctcaattattcaatttaagattgaatttctagctagtaatcaatttgac |
101 |
Q |
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| T |
44640829 |
agttggagtttaaacttcaaatttctcaattattcaatttaagactgaatttctagctagtaatcaatttgac |
44640901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 44680331 - 44680397
Alignment:
| Q |
300 |
gacaaaacgacaaataaatcaccgag-ttgttgtttttcaagtcgctttttattgacccacccacag |
365 |
Q |
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| T |
44680331 |
gacaaaacgacaaattaatcaccgaggttgttgtttttcaagtcgcttattattggcccacccacag |
44680397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 44651479 - 44651538
Alignment:
| Q |
234 |
ttaattccattccttttcttgaggggt--aatccactactc-tatccaatgtaatccatg |
290 |
Q |
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|||||| |||||| ||||||||||||| ||||||||| || |||||||||||||||||| |
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| T |
44651479 |
ttaatttcattccatttcttgaggggtaaaatccactagtcttatccaatgtaatccatg |
44651538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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