View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_2 (Length: 564)

Name: NF0674_low_2
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_2
NF0674_low_2
[»] chr3 (1 HSPs)
chr3 (17-564)||(51992705-51993255)
[»] chr4 (2 HSPs)
chr4 (349-409)||(8187284-8187344)
chr4 (346-397)||(55505310-55505361)


Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Original strand, 51992705 - 51993255
Alignment:
Q  17 catcatcaaatatagtttcaaaggaatactctaaattaaatctaaagtaaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcataggtgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51992705 catcatcaaatatagtttcaaaggaatactctaaattaaatctaaaataaaacaaaaacgaaagcatccgtgaatctggaaatatgaagatcataggtgt 51992804  T
Q  117 acagtgtactaccctgaaaagtaccatgtcagttctaaaataaatctcttcttacaatgtaataaatctaaaattcaacatgaaacatatctacca---a 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  51992805 acagtgtactaccctgaaaagtaccatgtcagttctaaaataaatctcttcttacaatgtaataaatctaaaattcaacatgaaacatatctaccagcaa 51992904  T
Q  214 tcaacgagggaagctattatgaaaaacaaaacattttacattttagaatccaaacttcagcagagtagaagacatacatg----actcaagaagagttct 309  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||    
T  51992905 tcaacaagggaaactattataaaaaacaaaacattttacattttagaattcaaacttcagcagagtagaagacatacatgcatgactcaagaagagttct 51993004  T
Q  310 ttctctatgtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51993005 ttctctatgtcaatggaatgatagcaaggtggaacaaatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctca 51993104  T
Q  410 attttagtcttttctcatagtttcatgtgcttcactcccttctatgtgaagactaacctaaatgtagacaaattattgctccaatatatacttacttcaa 509  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  51993105 attttagtcttttctcatagtttcatgtgcttctctcccttctatgtgaagactaacctaaatgtagacaaattattgctcca----atacttacttcaa 51993200  T
Q  510 tctccaaaagctctcccattgtttctctctccttccaaaactttctccttcttct 564  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51993201 tctccaaaagctctcccattgtttctctcttcttccaaaactttctccttcttct 51993255  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 8187344 - 8187284
Alignment:
Q  349 gatggccgtgaaaatatcatcgagccaacaacactaggatgcactttatagcagcccctca 409  Q
    ||||||| |||||||||||||||| ||||||||  ||||||||| |||||||||| |||||    
T  8187344 gatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctca 8187284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 55505361 - 55505310
Alignment:
Q  346 aatgatggccgtgaaaatatcatcgagccaacaacactaggatgcactttat 397  Q
    |||||||||| |||||||| ||| ||| |||||||||||| |||||||||||    
T  55505361 aatgatggccttgaaaataccattgagtcaacaacactagtatgcactttat 55505310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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