View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_21 (Length: 371)
Name: NF0674_low_21
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 15226865 - 15226501
Alignment:
| Q |
13 |
aatatgattcaacttctactactttcttgcattttctc----------ttgttttctatcaacttttgatcctctcaccaacaatcctgaattcagttac |
102 |
Q |
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| T |
15226865 |
aatatgattcaacttctactactttcttgcattttctcctcttttctcttgttttctatcaacttttgatcctctcaccagcaatcctgaattcggttac |
15226766 |
T |
|
| Q |
103 |
gccttcgattgcccaaactattgtgcacatttatataacttcaaatgcttgtaacaccttaaaggaaagtttctctcttgccaaacgtgcaagtgtctct |
202 |
Q |
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| T |
15226765 |
gcctttgattgcccaaactattttgcacatttatataacttcaaatgcttgtaacaccttaaaggaaagtttctctcttgccaaacgtgcaagtgtctct |
15226666 |
T |
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| Q |
203 |
gatcttcaatccgaattgttgataag-tgtgttagtgattgtttcac-ataatcagcacaatttgggaagaattagaaatgtataggtcaattccaaatt |
300 |
Q |
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| T |
15226665 |
gatcttcaatccgaattgttgataagttgtgttagtgattgtttcactaatatcagcacaatttgggaagaattagaaatgcataggtcaattccaaatt |
15226566 |
T |
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| Q |
301 |
gtacatatcatgttcctagtgcttttgaagctatgcgcaattctcatcataatattacatgaaga |
365 |
Q |
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| T |
15226565 |
gtacatatcatgttcccagtgcttttgaagctatgcgcaattctcatcataatattacatgaaga |
15226501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 15225691 - 15225646
Alignment:
| Q |
263 |
ttgggaagaattagaaatgtataggtcaattccaaattgtacatat |
308 |
Q |
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| T |
15225691 |
ttgggaataattggaaatgtataggccaattccaaattgttcatat |
15225646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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