View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_22 (Length: 363)
Name: NF0674_low_22
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 33233379 - 33233510
Alignment:
| Q |
177 |
cctccattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatcttcacattcat |
276 |
Q |
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| T |
33233379 |
cctccattgcttctaaagtcattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatcttcacattcat |
33233478 |
T |
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| Q |
277 |
tgcttttgaactcactatactccttatgtgtg |
308 |
Q |
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| T |
33233479 |
tgcttttgaactcactatactccttatgtgtg |
33233510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 33233262 - 33233318
Alignment:
| Q |
60 |
catcatcatcttcacattcattgggttaattcaaacttgctatactccttacgttta |
116 |
Q |
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| T |
33233262 |
catcatcatcttcacattcattgggttaattcaaacttgctatactccttacgttta |
33233318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 304
Target Start/End: Original strand, 33233761 - 33233887
Alignment:
| Q |
181 |
cattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcat---cttcacattcatt |
277 |
Q |
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| T |
33233761 |
cattgcttctaaagccgttaccttcctcaagtgcgtttccttcaattagcttccgcttctttttcatcttctttccttggtcatcatcttcacattcatt |
33233860 |
T |
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| Q |
278 |
gcttttgaactcactatactccttatg |
304 |
Q |
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||| ||||||||| |||||| |||||| |
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| T |
33233861 |
gctattgaactcattatacttcttatg |
33233887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 33233575 - 33233696
Alignment:
| Q |
181 |
cattgcttctaaagccattacactcagtaagtgtgcttccttcaattagtttgtgcttctttttcgtcttttttccttggtcatc---ttcacattcatt |
277 |
Q |
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|||||||||||||| ||||||| || | |||||| ||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||| |
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| T |
33233575 |
cattgcttctaaagtcattacattccatcagtgtgtttccttcaattag------cttctttttcatcttctttccttggtcatcagcttcacattcatt |
33233668 |
T |
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| Q |
278 |
gcttttgaactcactatactccttatgt |
305 |
Q |
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||||||||||| |||||||||||||| |
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| T |
33233669 |
acttttgaactcgttatactccttatgt |
33233696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 34156385 - 34156299
Alignment:
| Q |
221 |
ttcaattagtttgtgcttctttttcgtcttttttccttggtcatc---ttcacattcattgcttttgaactcactatactccttatg |
304 |
Q |
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||||||||| || ||||||||||| |||| |||||||||||||| ||||||||||||||| | ||||||| |||||| |||||| |
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| T |
34156385 |
ttcaattagcttccgcttctttttcatcttctttccttggtcatcatcttcacattcattgctatcgaactcattatacttcttatg |
34156299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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