View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_24 (Length: 354)
Name: NF0674_low_24
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 21004147 - 21004285
Alignment:
| Q |
8 |
ccaataatattatcatgtatacttcaactgagcaaaaaattttgatcattttctaacattatacaaagatttaaaatgctcattgagtgacaatgatttc |
107 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21004147 |
ccaacaatattaccatgtatacttcaactgagcaaaaatttgtgatcattttctaacattatacaaagatttaaaatgttcattgagtgacaatgatttg |
21004246 |
T |
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| Q |
108 |
ctgatttcttaactccttgttcacaaaccatgtatactt |
146 |
Q |
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| T |
21004247 |
ctgatttcttaactccttgttcacgaaccatgtatactt |
21004285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 181 - 333
Target Start/End: Original strand, 21004320 - 21004459
Alignment:
| Q |
181 |
tgtgatcgtatcaaagagtctaaagattcactcacgacaaatcaaagaaaattgaaaaccaacaaaaacctaaacaattccctgcaactataaaatggtg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21004320 |
tgtgatcgtatcaaagagtctaaagattcactcacgacaaat-------------aaaccaacaaaaacctaaacgattccctgcaactataaaatggtg |
21004406 |
T |
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| Q |
281 |
atcatttaaaataacaacgttgtatttcattggagaatccacacatgatgatg |
333 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21004407 |
atcatttaaaataacaacgttgaatttcattggagaatccacacatgatgatg |
21004459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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