View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_25 (Length: 349)
Name: NF0674_low_25
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31159561 - 31159340
Alignment:
| Q |
1 |
ctcacatgctttttgttttaatttcttaatgtaatgatttgttgttatttggtgactttttaaaactttcaggcctcaatatgcagagattgaaaagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31159561 |
ctcacatgctttttgttttaatttcttaatgtaatgatttgttgttatttggtgactttttaaaactttcaggcctcaatatgcagagattgaaaagatt |
31159462 |
T |
|
| Q |
101 |
gttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctattac |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31159461 |
gttgaagagataacgaatatatcgggtcacaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctattac |
31159362 |
T |
|
| Q |
201 |
ttttggactccgttgatgatgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
31159361 |
ttttggactccgttgatgatgt |
31159340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 31020112 - 31019891
Alignment:
| Q |
2 |
tcacatgctttttgttttaattt-cttaatgtaatgatttgttgttatttggtgactt-tttaaaactttcaggcctcaatatgcagagattgaaaagat |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||| || ||| ||||||| |||||||||||||| |||||| ||||||| |
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| T |
31020112 |
tcacatgctttttgttttaattttcttaa-gtaatgattcagtgttattggttgatttcttttaaacttttaggcctcaatatgctgagattaaaaagat |
31020014 |
T |
|
| Q |
100 |
tgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctatta |
199 |
Q |
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||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| || ||| || |||||||||||||| |||||||||| |
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| T |
31020013 |
tgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatcctcatatagaaaaagtagtaaatctatta |
31019914 |
T |
|
| Q |
200 |
cttttggactccgttgatgatgt |
222 |
Q |
| |
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||||||||||| ||||||||||| |
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|
| T |
31019913 |
cttttggactcggttgatgatgt |
31019891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 31029993 - 31029772
Alignment:
| Q |
2 |
tcacatgctttttgttttaattt-cttaatgtaatgatttgttgttatttggtgactt-tttaaaactttcaggcctcaatatgcagagattgaaaagat |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||||| | ||| || ||| ||||||| |||||||||||||| |||||| ||||||| |
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| T |
31029993 |
tcacatgctttttgttttaattttcttaa-gtaatgattcagtgttattggttgatttcttttaaacttttaggcctcaatatgctgagattaaaaagat |
31029895 |
T |
|
| Q |
100 |
tgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctatta |
199 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| || ||| || |||||||||||||| |||||||||| |
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| T |
31029894 |
tgttgaagagatattgaatatattgggtcacaacttttcatctcttccaaaagaactagttggtatgaatcctcatatagaaaaagtagtaaatctatta |
31029795 |
T |
|
| Q |
200 |
cttttggactccgttgatgatgt |
222 |
Q |
| |
|
||||||||||| ||||||||||| |
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|
| T |
31029794 |
cttttggactcggttgatgatgt |
31029772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 31489435 - 31489655
Alignment:
| Q |
2 |
tcacatgctttttgttttaatttcttaatgtaatgatttgttgttatttggtgactttttaa-aactttcaggcctcaatatgcagagattgaaaagatt |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||||| ||||||| | ||||||||| |||||||||||||||||||| ||||||| |||||||| |
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|
| T |
31489435 |
tcacattctttttgttttaattcctta-tgtaatgattaagtgttattggttgactttttcttaactttcaggcctcaatatgaagagattaaaaagatt |
31489533 |
T |
|
| Q |
101 |
gttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctattac |
200 |
Q |
| |
|
||||| |||||| |||||||||||||||| | ||||| ||||||||||||| ||||||| || |||| || |||||| ||||||||||||||||||| |
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| T |
31489534 |
gttgacgagatattgaatatattgggtcacaattattcatctcttccaaaagaactagttggtatgaattctcatatagataaagtagcaaatctattac |
31489633 |
T |
|
| Q |
201 |
ttttggactccgttgatgatgt |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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|
| T |
31489634 |
ttttggactccattgatgatgt |
31489655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 31034207 - 31034133
Alignment:
| Q |
88 |
gattgaaaagattgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttgg |
162 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||| || |||||| ||||||||||||| |||||||| |
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|
| T |
31034207 |
gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgg |
31034133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 31150600 - 31150437
Alignment:
| Q |
61 |
taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagtt |
160 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||| ||||||||||| | |||| |||||| |||| ||||| |||||||||| | ||||| |
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|
| T |
31150600 |
taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtc |
31150501 |
T |
|
| Q |
161 |
ggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgtcc |
224 |
Q |
| |
|
|| || ||| |||| || | || ||| ||| | |||||||||||||| |||||||||||| |
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|
| T |
31150500 |
gggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
31150437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 31528659 - 31528560
Alignment:
| Q |
63 |
aaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttgg |
162 |
Q |
| |
|
||||||||||||| || | ||||||||| |||||||||||||||||||| | |||||||| | |||||||||| | |||||||| || |||||||| |
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|
| T |
31528659 |
aaactttcaggccccagtcagcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgg |
31528560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 17438641 - 17438801
Alignment:
| Q |
58 |
ttttaaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaatta |
157 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||| ||||||||||| || |||||| ||||||||| ||||| ||||||| | ||||||| ||| |
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|
| T |
17438641 |
ttttcaaactttcaggccacaatgtgcagagattaaaaagattgttcaaaagataatgaatatattggaatgcaaatcttcatgtaattcaaaagattta |
17438740 |
T |
|
| Q |
158 |
gttggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatg |
218 |
Q |
| |
|
||||| ||||||| || ||||||| | || ||||| |||||||||||||| ||||||| |
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|
| T |
17438741 |
gttgggataaattctcgtatagaagcattaaaaaatcatttacttttggactcggttgatg |
17438801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 33402875 - 33402758
Alignment:
| Q |
64 |
aactttcaggcctcaatatgcagagattgaaaagattgttgaagagataacacatatattgggtcacaaattttcatgtcttccaaaagaattagttgga |
163 |
Q |
| |
|
|||||||||||| ||| || ||||||| ||||||||||| || |||||| ||||||||| ||||| ||||||| || ||||||| |||||||| |
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|
| T |
33402875 |
aactttcaggccacaagctggagagattaaaaagattgttcaaaagataatgaatatattggagtgcaaatcttcatgtgtttcaaaagatttagttggg |
33402776 |
T |
|
| Q |
164 |
ataaattatcctatagaa |
181 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
33402775 |
attgattctcctatagaa |
33402758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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