View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_27 (Length: 343)
Name: NF0674_low_27
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 17845957 - 17846272
Alignment:
| Q |
23 |
tgtgatctttgagtagttttcaatcttgacaattcatgtgggagtgcatggatgttattagctttactcgttataggacaattctttcacttgatatgcc |
122 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
17845957 |
tgtgatctttgagtggttttcaatcttgacaattcatgtgggagtgcatggacgttattagcttcactcgttatacgacaattctttcacttgatatgcc |
17846056 |
T |
|
| Q |
123 |
acccccatcacccctacacacgcgcgcaatatttggggaagcttataaaagattgttattgtgtaggaaattcgtccatggacacatatgatggaggttc |
222 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17846057 |
acccccatcacccctacacacacgcacaatatttggggaagcttataaaagattgttgttgtgtaggaaatacgtccatggacacatatgatggaggttc |
17846156 |
T |
|
| Q |
223 |
cacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatgctttgcaaaaacattattct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17846157 |
cacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatgctttgcaaaaacattattct |
17846256 |
T |
|
| Q |
323 |
taaaacctatgatact |
338 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17846257 |
taaaacctatgatact |
17846272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 20413191 - 20413507
Alignment:
| Q |
23 |
tgtgatctttgagtagttttcaatcttgacaattcatgtgggagtgcatggatgttattagctttactcgttataggacaattctttcacttgatatgcc |
122 |
Q |
| |
|
||||||||| ||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||| | ||| |
|
|
| T |
20413191 |
tgtgatcttcgagtaattttcgatcttgtcaattcatgtgggattgcatggacactattagctttactcgttatacgataattctgtcacttgacaagcc |
20413290 |
T |
|
| Q |
123 |
-acccccatcacccctacacacgcgcgcaatatttggggaagcttataaaagattgttattgtgtaggaaattcgtccatggacacatatgatggaggtt |
221 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20413291 |
cacccccatcacccctacatacgcgcacaatatttggcgaagcttataaaagattattgttgtgtaggaaattcgtccatggacacatatgatggaggtt |
20413390 |
T |
|
| Q |
222 |
ccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatgctttgcaaaaacattattc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
20413391 |
ccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatggttggcaaaaatattattc |
20413490 |
T |
|
| Q |
322 |
ttaaaacctatgatact |
338 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
20413491 |
ttaaaacctatgatact |
20413507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 5310331 - 5310647
Alignment:
| Q |
23 |
tgtgatctttgagtagttttcaatcttgacaattcatgtgggagtgcatggatgttattagctttactcgttataggacaattctttcacttgatatgcc |
122 |
Q |
| |
|
||||||||| ||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||||||| | ||| |
|
|
| T |
5310331 |
tgtgatcttcgagtaattttcgatcttgtcaattcatgtgggattgcatggacactattagctttactcgttatacgataattctgtcacttgacaagcc |
5310430 |
T |
|
| Q |
123 |
-acccccatcacccctacacacgcgcgcaatatttggggaagcttataaaagattgttattgtgtaggaaattcgtccatggacacatatgatggaggtt |
221 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310431 |
cacccccatcacccctacatacgtgcacaatatttggcgaagcttataaaagattattgttgtgtaggaaattcgtccatggacacatatgatggaggtt |
5310530 |
T |
|
| Q |
222 |
ccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatgctttgcaaaaacattattc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
5310531 |
ccacaactacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggtaatctttcctatggttggcaaaaatattattc |
5310630 |
T |
|
| Q |
322 |
ttaaaacctatgatact |
338 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5310631 |
ttaaaacctatgatact |
5310647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 38640475 - 38640415
Alignment:
| Q |
229 |
tacatgggtttggaccagctgccaatcggttattggaggcatacaaaatgcttctaaaggt |
289 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
38640475 |
tacatgggtctggaccagctgccaataagttattgaaggcatacaaagtgcttataaaggt |
38640415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 291
Target Start/End: Complemental strand, 32552704 - 32552570
Alignment:
| Q |
157 |
ggggaagcttataaaagattgttattgtgtaggaaattcgtccatggacacatatgatggaggttccacaactacatgggtttggaccagctgccaatcg |
256 |
Q |
| |
|
||||||| ||||||| |||| | ||||||||||||| || |||||||| || |||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
32552704 |
ggggaagattataaacaattgcttttgtgtaggaaatccggccatggacgcacatgatggaggttccacaacttcatggattcggaccagctgccaatcg |
32552605 |
T |
|
| Q |
257 |
gttattggaggcatacaaaatgcttctaaaggtaa |
291 |
Q |
| |
|
| ||||||| || |||||||||||| | ||||||| |
|
|
| T |
32552604 |
gctattggaagcttacaaaatgcttttgaaggtaa |
32552570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1243 times since January 2019
Visitors: 4413