View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_29 (Length: 338)
Name: NF0674_low_29
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_29 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 102 - 338
Target Start/End: Original strand, 4281472 - 4281708
Alignment:
| Q |
102 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgataaccgggctgatggagatgagaaattgag |
201 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281472 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacactacacttcatttaccgataaccgggctgatggagatgagaaattgag |
4281571 |
T |
|
| Q |
202 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4281572 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
4281671 |
T |
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| Q |
302 |
ccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4281672 |
ccaaaatatccattatcatactagattattgccaaaa |
4281708 |
T |
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Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 102 - 338
Target Start/End: Complemental strand, 31710416 - 31710180
Alignment:
| Q |
102 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgataaccgggctgatggagatgagaaattgag |
201 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31710416 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacattccacttcatttaccgataaccgagctgatggagatgagaaattgag |
31710317 |
T |
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| Q |
202 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
301 |
Q |
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| T |
31710316 |
ttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtccaacctattgtct |
31710217 |
T |
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| Q |
302 |
ccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
31710216 |
ccaaaatatcaattatcatactagattattgccaaaa |
31710180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 171 - 338
Target Start/End: Complemental strand, 14674717 - 14674550
Alignment:
| Q |
171 |
ataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatg |
270 |
Q |
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||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
14674717 |
ataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgtagtattaatg |
14674618 |
T |
|
| Q |
271 |
aaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
14674617 |
aaatcagggatgaatgtccaacctattgtctccaaaatatcaattatcatactagactattgccaaaa |
14674550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 20133873 - 20133967
Alignment:
| Q |
170 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagta |
264 |
Q |
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| T |
20133873 |
gataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagta |
20133967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 18974466 - 18974387
Alignment:
| Q |
259 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
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|||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18974466 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatttccaaaa |
18974387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 17535285 - 17535348
Alignment:
| Q |
159 |
cttcatttaccgataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgagg |
222 |
Q |
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||||||| || ||||||| || |||||||||||||||||||| | ||| |||||||||||||| |
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| T |
17535285 |
cttcattcactgataaccaggacgatggagatgagaaattgagcttgttagttgaatcttgagg |
17535348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 17594919 - 17594762
Alignment:
| Q |
102 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttcatttaccgataaccgggctgatggagatgagaaattgag |
201 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17594919 |
cactgtcggtcggatcttcgtgacgtcgttggcgttgagagaaagccacacattccacttcatttaccgataaccaggctgatggagatgagaaattgag |
17594820 |
T |
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| Q |
202 |
ttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctg |
259 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
17594819 |
ttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg |
17594762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 19807219 - 19807298
Alignment:
| Q |
259 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
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|||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19807219 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatcatactagattatttccaaaa |
19807298 |
T |
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Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 102 - 332
Target Start/End: Complemental strand, 8166058 - 8165820
Alignment:
| Q |
102 |
cactgtcggtcggatcttcgtgacgttgttggtgttgagagaaagccacacactccacttca-----------tttaccgataaccgggctgatggagat |
190 |
Q |
| |
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|||||||| || |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||||| || |||| || |
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| T |
8166058 |
cactgtcgatcagatcttcgtgacgtcgttggtgttgagagaaagccgcacattccacttccattccacttcctttaccgataaccgggttgttggaaat |
8165959 |
T |
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| Q |
191 |
gagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatgaaatcagggatgaaggtcca |
290 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||| |||| ||| ||||||||||||||| | ||||||||||| |
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| T |
8165958 |
gagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccct---tgtggtattaatgaaatcaagaatgaaggtcca |
8165862 |
T |
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| Q |
291 |
acctattgtctccaaaatatccattatcatactagattattg |
332 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8165861 |
acctattgtctccaaaatatcaattatcatactagattattg |
8165820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 170 - 309
Target Start/End: Complemental strand, 11203589 - 11203450
Alignment:
| Q |
170 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
269 |
Q |
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|||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||| |
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| T |
11203589 |
gataaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtacaatacctttgctgtagtagtaat |
11203490 |
T |
|
| Q |
270 |
gaaatcagggatgaaggtccaacctattgtctccaaaata |
309 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||| |
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| T |
11203489 |
gaaatcaaggatgaaagtccaatctattgtctccagaata |
11203450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 12325891 - 12325739
Alignment:
| Q |
170 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
269 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | |
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| T |
12325891 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagt |
12325792 |
T |
|
| Q |
270 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
319 |
Q |
| |
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| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |
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| T |
12325791 |
aatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca |
12325739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 47997 - 47845
Alignment:
| Q |
170 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaat |
269 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||| || | |
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| T |
47997 |
gataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgtagtagtagt |
47898 |
T |
|
| Q |
270 |
ga---aatcagggatgaaggtccaacctattgtctccaaaatatccattatca |
319 |
Q |
| |
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| ||||| ||||||| |||||| |||||||||||| ||||| ||||||| |
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| T |
47897 |
aatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca |
47845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 44358198 - 44358104
Alignment:
| Q |
170 |
gataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagta |
264 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||| |
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|
| T |
44358198 |
gataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagta |
44358104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 5331406 - 5331485
Alignment:
| Q |
259 |
gtagtattaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatcatactagattattgccaaaa |
338 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
5331406 |
gtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatcccttatcatactagattatttccaaaa |
5331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 343 - 383
Alignment:
| Q |
182 |
gatggagatgagaaattgagttcgtttgttgaatcttgagg |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
343 |
gatggagatgagaaattgagtttgtttgttgaatcttgagg |
383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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