View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_36 (Length: 316)
Name: NF0674_low_36
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 45073422 - 45073608
Alignment:
| Q |
73 |
agattattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45073422 |
agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
45073521 |
T |
|
| Q |
173 |
tttgttagctgcagaacacaaactaagttaacg-------taagcagaacatgataagttcccttccaaacacaaatcattgtctaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45073522 |
tttgttagctgcagaacacaaactaagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtctaa |
45073608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 8880281 - 8880467
Alignment:
| Q |
73 |
agattattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
172 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
8880281 |
agataattcttcaacctcgagtaatggcagtagcccgcttgacaacaatggaaataaacctgcataggatgtatacctgcggaataaatccaactataag |
8880380 |
T |
|
| Q |
173 |
tttgttagctgcagaacacaaact-aagttaac-------gtaagcagaacatgataagttcccttccaaacacaaatcattgtctaa |
252 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8880381 |
tttgttagctgcagaacacaagctaaagttaacattaataataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaa |
8880467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 8884087 - 8884201
Alignment:
| Q |
79 |
ttcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcgga---ataaatccaaccatgagttt |
175 |
Q |
| |
|
|||||||||| ||| ||||||||||| || || || ||||||||||||||||| ||| |||||||||||||| || | ||||| ||||| |||||| |
|
|
| T |
8884087 |
ttcttcaaccgtaagtaatggcagtagtccgctcgaaagcaatggaaataaaccggcaaaggatgtatacctgaagaaccacaaatcaaaccacgagttt |
8884186 |
T |
|
| Q |
176 |
gttagctgcagaaca |
190 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8884187 |
attagctgcagaaca |
8884201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1593 times since January 2019
Visitors: 4425