View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_40 (Length: 308)
Name: NF0674_low_40
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 49385472 - 49385598
Alignment:
| Q |
89 |
catcatcataagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
188 |
Q |
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| T |
49385472 |
catcatcacaagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
49385571 |
T |
|
| Q |
189 |
agatcacatcagattcatctttcaaag |
215 |
Q |
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| T |
49385572 |
agatcacatcagattcatctttcaaag |
49385598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 40001351 - 40001303
Alignment:
| Q |
140 |
tcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
188 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
40001351 |
tcaatccatattttctttgccattttcttagccatgtcaacttctaaaa |
40001303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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