View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_43 (Length: 294)

Name: NF0674_low_43
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_43
NF0674_low_43
[»] chr4 (11 HSPs)
chr4 (1-163)||(3762512-3762674)
chr4 (1-163)||(3776593-3776755)
chr4 (1-163)||(3780906-3781068)
chr4 (55-158)||(3745721-3745824)
chr4 (1-163)||(3751533-3751695)
chr4 (1-163)||(3755400-3755562)
chr4 (1-163)||(3766928-3767090)
chr4 (42-104)||(3789113-3789175)
chr4 (42-110)||(3845060-3845128)
chr4 (55-117)||(3770737-3770799)
chr4 (61-106)||(3851509-3851554)
[»] chr5 (1 HSPs)
chr5 (168-261)||(42010321-42010414)
[»] chr3 (1 HSPs)
chr3 (168-261)||(1245659-1245752)
[»] scaffold0433 (1 HSPs)
scaffold0433 (42-110)||(10020-10088)
[»] chr7 (1 HSPs)
chr7 (55-147)||(25985499-25985591)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3762674 - 3762512
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  3762674 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttatgacagtgaattttgctttcattgaaggaaagtataatggtagtactatta 3762575  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3762574 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 3762512  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3776755 - 3776593
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  3776755 gctcaaggattctatgcatctgcttcacaggaagaaataggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtaccatta 3776656  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    ||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||| ||||    
T  3776655 ctatcttggggaggaatcatgctcgtaataaggttagggaaatgcctgttgttggtggtagtg 3776593  T

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Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3781068 - 3780906
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||    
T  3781068 gctcaaggattctatgcatctgcttcacaagaagaactaggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactctta 3780969  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    ||||| | ||||||||||| ||  |||||  ||||||||||||||||||||||||||| ||||    
T  3780968 ctatcgtagggaggaatcctgccattaatttggttagggagatgcctgttgttggtggtagtg 3780906  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 3745824 - 3745721
Alignment:
Q  55 atgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttg 154  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||    
T  3745824 atgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaataaggttagggaaatgcctattgttg 3745725  T
Q  155 gtgg 158  Q
    ||||    
T  3745724 gtgg 3745721  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3751695 - 3751533
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    |||||||| |||||||||||||||||||| || ||  | ||||||||  || | ||||| |||||||| |||||||||||||||||||| ||||| ||||    
T  3751695 gctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaatta 3751596  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    ||||||||||||||||| | | | ||||||||| ||| ||||||||| || ||||||| ||||    
T  3751595 ctatcttggggaggaattctggtattaataaggctagagagatgcctattattggtggtagtg 3751533  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3755562 - 3755400
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    |||||||||||||||||||||||||   | || ||| | | ||| ||| || | |||||||||||||| | ||||||||||||||||||||||||  |||    
T  3755562 gctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacactta 3755463  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    |||| ||||| |||||| | | | || |||| ||||| |||||||||||  ||||||| ||||    
T  3755462 ctatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggtggtagtg 3755400  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 3767090 - 3766928
Alignment:
Q  1 gctcaaggattctatgcatctgcatcacaggaagaaataggttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactatta 100  Q
    |||||||||||||||||||||||||   | || ||| | | ||| ||| || | |||||||||||||| | ||||||||||||||||||||||||  |||    
T  3767090 gctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacactta 3766991  T
Q  101 ctatcttggggaggaatccagctcttaataaggttagggagatgcctgttgttggtggcagtg 163  Q
    |||| ||||| |||||| | | | || |||| ||||| |||||||||||  ||||||| ||||    
T  3766990 ctatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggtggtagtg 3766928  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 3789175 - 3789113
Alignment:
Q  42 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactat 104  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||||||||||| || ||||||||    
T  3789175 ttttcttatgattatgaactttgctttgtttgaaggaaagtataatggaagcaccattactat 3789113  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 3845128 - 3845060
Alignment:
Q  42 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggg 110  Q
    ||||||| ||| |||||||||||| ||  ||||||| || ||||||||||| || ||||||||||||||    
T  3845128 ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttggg 3845060  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 3770799 - 3770737
Alignment:
Q  55 atgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaat 117  Q
    |||||||||| ||| | |||||||||||||||||||||||   ||||||| ||||| ||||||    
T  3770799 atgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaaggaat 3770737  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 3851554 - 3851509
Alignment:
Q  61 tttgctttgattgaaggaaagtataatggaagtactattactatct 106  Q
    ||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  3851554 tttgccttgtttgaaggaaagtataatgggagtaccattactatct 3851509  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 42010321 - 42010414
Alignment:
Q  168 agcagaacctgtggctcgagtattggctgaaacaccaatgtcgtcatcatcatcgtcttcatcacgtttgtctcctcagctttacaagattcaa 261  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42010321 agcagaaactgtggctcgagtattggctgaaacaccaatgccgtcatcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaa 42010414  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 1245659 - 1245752
Alignment:
Q  168 agcagaacctgtggctcgagtattggctgaaacaccaatgtcgtcatcatcatcgtcttcatcacgtttgtctcctcagctttacaagattcaa 261  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||    
T  1245659 agcagaaactgtggctcgagtattggctgaaacaccaatgccgtcatctttatcgtcttcatcacgtttatctcctcggctttacaagattcaa 1245752  T

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Target: scaffold0433 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 10020 - 10088
Alignment:
Q  42 ttttcttgtgacaatgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggg 110  Q
    ||||||| ||| |||||||||||| ||  ||||||| || ||||||||||| || ||||||||||||||    
T  10020 ttttcttatgataatgaattttgcattatttgaagggaaatataatggaagcacaattactatcttggg 10088  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 25985499 - 25985591
Alignment:
Q  55 atgaattttgctttgattgaaggaaagtataatggaagtactattactatcttggggaggaatccagctcttaataaggttagggagatgcct 147  Q
    |||||||||||| | |||||||| ||||| ||||| || || || ||||| |||||||||||||| | |  | ||||||||||||| ||||||    
T  25985499 atgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttagggaaatgcct 25985591  T

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