View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_49 (Length: 279)
Name: NF0674_low_49
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 14812336 - 14812605
Alignment:
| Q |
1 |
tagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgca |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14812336 |
tagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgca |
14812435 |
T |
|
| Q |
101 |
aatttgtaaccacatactcttttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
14812436 |
aatttgtaaccacatactcttttgagtttaacagcgagacttctctctatatcttcagatattgttttcccaaacaaaagcctctttggaaggtgctttt |
14812535 |
T |
|
| Q |
201 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14812536 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
14812605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 15259331 - 15259600
Alignment:
| Q |
1 |
tagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgca |
100 |
Q |
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||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15259331 |
tagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgca |
15259430 |
T |
|
| Q |
101 |
aatttgtaaccacatactcttttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |
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| T |
15259431 |
aatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgtttttccaaacaaaagcctctttgtaaggtgctttt |
15259530 |
T |
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| Q |
201 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15259531 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcatcaccttgtcaagaataat |
15259600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 14804916 - 14805009
Alignment:
| Q |
1 |
tagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
94 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
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| T |
14804916 |
tagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 15251910 - 15252003
Alignment:
| Q |
1 |
tagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaat |
94 |
Q |
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|
|||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| |||||||| |
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| T |
15251910 |
tagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtatcagcaaccattgtctctaat |
15252003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 17521844 - 17521575
Alignment:
| Q |
1 |
tagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatatccataaccattatctctaatagtgca |
100 |
Q |
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|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17521844 |
tagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatatccataaccattatctctaatagtgca |
17521745 |
T |
|
| Q |
101 |
aatttgtaaccacatactcttttgagtttaacagcgagacttctctatatatcttcagatattgttttcccaaacaaaagcctctttgcaaggtgcattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
17521744 |
aatttgtaaccacatactcttttgagtttaacagcgagatttctctctatatcttcagatattgttttgccaaacaaaagcctctttgcaaggtgctttt |
17521645 |
T |
|
| Q |
201 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521644 |
tatagtacttatggaacaaatctttatcatgcaacaatttgataaacatcaccaccttgtcaagaataat |
17521575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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