View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_50 (Length: 275)
Name: NF0674_low_50
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_50 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 45374604 - 45374365
Alignment:
| Q |
36 |
ctgttgcccacttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggcttcctttctctatttcataggatattgaaatgatga |
135 |
Q |
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| T |
45374604 |
ctgttgcccacttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggcttcctttctctatttcataggatattgaaataatga |
45374505 |
T |
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| Q |
136 |
gtaagaagtattaaacaagaaggattttaaaaatatccatttgagcactatgctttttattagactattatgtgcatatctcaatatttagaatagcatg |
235 |
Q |
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| T |
45374504 |
gtaagaagtattaaacatgaaggatgttaaaaatatccatttgagcactatgctttttattagactattatgtgcatagctctatatttagaatagaatg |
45374405 |
T |
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| Q |
236 |
attgtaaaacgcaacatatgtcagctctgaagctaatatt |
275 |
Q |
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| T |
45374404 |
attgtaaaacacaacatatgtcagctctgaagctaatatt |
45374365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 45389762 - 45389523
Alignment:
| Q |
36 |
ctgttgcccacttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggcttcctttctctatttcataggatattgaaatgatga |
135 |
Q |
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| T |
45389762 |
ctgttacccgcttttctttctcttatgcaatttgaaaaattcaatatagggaatagcatgtggattcttttctctatttcataagatattgaagtgatga |
45389663 |
T |
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| Q |
136 |
gtaagaagtattaaacaagaaggattttaaaaatatccatttgagcactatgctttttattagactattatgtgcatatctcaatatttagaatagcatg |
235 |
Q |
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| T |
45389662 |
gtaagaagtattaaacaagaatgatgttaaaaatatccatttgagctctatgcttttaattagactattatgtgtgtatctctgtatttagaatagcatg |
45389563 |
T |
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| Q |
236 |
attgtaaaacgcaacatatgtcagctctgaagctaatatt |
275 |
Q |
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| T |
45389562 |
attgtaaaacgcaacatatgtcagctctgaaactaatatt |
45389523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 22832594 - 22832641
Alignment:
| Q |
193 |
tattagactattatgtgcatatctcaatatttagaatagcatgattgt |
240 |
Q |
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| T |
22832594 |
tattagactattatgtgcatatctctatattcagaataacattattgt |
22832641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 25082242 - 25082190
Alignment:
| Q |
192 |
ttattagactattatgtgcatatctcaatattta-gaatagcatgattgtaaa |
243 |
Q |
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| T |
25082242 |
ttattagactattatgtgaatatctctatatttacgaatatcattattgtaaa |
25082190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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