View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_52 (Length: 271)
Name: NF0674_low_52
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 39088987 - 39088779
Alignment:
| Q |
28 |
tccaataatatctcttattggtgatctcccgttttatcggagatccacttctaatatagtgggacctacatgaattttacccaataaaagagtgttagag |
127 |
Q |
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| T |
39088987 |
tccaacaatatctcttattggcgatctcccgttttatcggagatccacttctaatatagtgggacctacatgaattttacccaataaaagagtgttagag |
39088888 |
T |
|
| Q |
128 |
tgagtattggcagttctcattttatgaatattagttcacattgtttatctattgatatagtggttcgactattgacacactaaccttgtaccctgatcaa |
227 |
Q |
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| T |
39088887 |
tgagtattggcagtactcattttatgaatattagttcacattgtttatctattgatatagtggttcgactattgacacactaaccttgtaccctgatcaa |
39088788 |
T |
|
| Q |
228 |
gttgatgat |
236 |
Q |
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|| |||||| |
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| T |
39088787 |
gtcgatgat |
39088779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 6992854 - 6992812
Alignment:
| Q |
76 |
ttctaatatagtgggacctacatgaattttacccaataaaaga |
118 |
Q |
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| T |
6992854 |
ttctaaaatagtgggacccacatgaatttcacccaataaaaga |
6992812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 33481005 - 33480968
Alignment:
| Q |
95 |
acatgaattttacccaataaaagagtgttagagtgagt |
132 |
Q |
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| T |
33481005 |
acatgaattttgtccaataaaagagtgttagagtgagt |
33480968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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