View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_55 (Length: 261)
Name: NF0674_low_55
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 51993256 - 51993426
Alignment:
| Q |
38 |
ggtttgcactgtcctattttattcatcacgttgaattccaattgccgtctcatttccnnnnnnnnnnnnngggcctgcgtgtgttcttttaattacttgg |
137 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51993256 |
ggtttgcactgccctattttatacatcacgttgaattccaattgccgtctcatttccttt----------gggcctgcgtgtgttcttttaattacttgg |
51993345 |
T |
|
| Q |
138 |
gcctcaaagtctggattcatttcttttctcacactactcacttctccattttggctcggcttatattatataatctgaacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51993346 |
gcctcaaagtctggattcatttcttttctcacgctactcacttctccattttggctcggcttatattatataatctgaacc |
51993426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1692 times since January 2019
Visitors: 4429