View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_59 (Length: 253)
Name: NF0674_low_59
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7073411 - 7073188
Alignment:
| Q |
1 |
ccgttcaactgctagtgaacaactgaaggnnnnnnnnnnnnnggttaccttctggaattgccttaaattaaatgagccttctctcaaggctattgagttg |
100 |
Q |
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| T |
7073411 |
ccgttcaactgctagtgaacaactgaaggaaaaaaagaaaaaggttaccttctggaattgccttaaattaaatgagccttctctcaaggctattgagttg |
7073312 |
T |
|
| Q |
101 |
aatgctcaaattaacgtgatgaacttttcacacaaacatattacatgggaccgtgatcgtgatcatgatcacaatcaaggcatgtatgtgtatccaggta |
200 |
Q |
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| T |
7073311 |
aatgctcaaattaacatgatgaacttttcacacaaacatattacatgggaccgtgatcgtgatcatgatcacaatcaaggcatgtatgtgtatccaggta |
7073212 |
T |
|
| Q |
201 |
gcaaaattccagagtggttggaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7073211 |
gcaaaattccagagtggttggaat |
7073188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 7025585 - 7025769
Alignment:
| Q |
43 |
ggttaccttctggaattgccttaaattaaatgagccttctctcaaggctattgagttgaatgctcaaattaacgtgatgaacttttcacacaaacatat- |
141 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||| |
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| T |
7025585 |
ggttaccttctggaattgccttaaaataaacgagccttctctcaaggctattgagttgaatgctaaaatcaacatgatgaacttttcacaccaacatata |
7025684 |
T |
|
| Q |
142 |
--tacatgggaccgtgatcgtgatcatgatcacaatcaaggcatgtatgtgtatccaggtagcaaaattccagagtggttggaat |
224 |
Q |
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| T |
7025685 |
tccacatgcgaccttgatcatgatcacgatcgcaaccaaggcatgtacgtgtatccaggtagcgaaattcctgagtggttggaat |
7025769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 7032965 - 7033155
Alignment:
| Q |
43 |
ggttaccttctggaattgccttaaattaaatgagccttctctcaaggctattgagttgaatgctcaaattaacgtgatgaacttttcacacaaacatat- |
141 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||| |
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| T |
7032965 |
ggttatcttctggaattgccttaaactaaatgaaccttctctcaaggctattgagttgaatgctcaaattaacatgatgagcttttcataccaacatata |
7033064 |
T |
|
| Q |
142 |
--tacatgggaccgtgatcgtg------atcatgatcacaatcaaggcatgtatgtgtatccaggtagcaaaattccagagtggttggaat |
224 |
Q |
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|||||||||||||| | || |||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| |
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| T |
7033065 |
tccacatgggaccgtgaccatgatcacaatcacaatcacaatcacagcatatatgtatatccaggtagcgaaattccagagtggttggaat |
7033155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 7038659 - 7038746
Alignment:
| Q |
43 |
ggttaccttctggaattgccttaaattaaatgagccttctctcaaggctattgagttgaatgctcaaattaacgtgatgaacttttca |
130 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||| |
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| T |
7038659 |
ggttgccttctggaattgccttaaactaaatgagccttctctcaaggctattgagttaaatgctcaaattaacatgataagcttttca |
7038746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 7038814 - 7038858
Alignment:
| Q |
180 |
gcatgtatgtgtatccaggtagcaaaattccagagtggttggaat |
224 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
7038814 |
gcatgtatctctatccaggtagcaaaattccagagtggttggaat |
7038858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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