View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_60 (Length: 251)

Name: NF0674_low_60
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_60
NF0674_low_60
[»] chr6 (2 HSPs)
chr6 (1-223)||(4183434-4183656)
chr6 (3-223)||(4744275-4744495)
[»] chr1 (5 HSPs)
chr1 (115-219)||(51858125-51858229)
chr1 (119-201)||(51381898-51381980)
chr1 (1-83)||(51763495-51763574)
chr1 (111-203)||(51829257-51829349)
chr1 (161-197)||(51763375-51763411)
[»] chr3 (6 HSPs)
chr3 (159-202)||(771956-771999)
chr3 (159-202)||(2455424-2455467)
chr3 (159-198)||(13497790-13497829)
chr3 (159-211)||(2476236-2476288)
chr3 (154-202)||(2491676-2491724)
chr3 (159-203)||(12217602-12217646)
[»] scaffold0044 (1 HSPs)
scaffold0044 (159-202)||(88709-88752)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4183656 - 4183434
Alignment:
Q  1 ctcaatctcctctatttttagttccgccacatcctttaccagtttcacacagctcaataaccatcctctcattcttaatcttaagggaggctatgtttgg 100  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||    |||||||||||||| ||| ||||||||||||||||||| |||| || ||    
T  4183656 ctcaatctcctctattttcagttccgctgcatcctttaccagtttcaagtggctcaataaccatcgtctgattcttaatcttaagggagactatattggg 4183557  T
Q  101 agagttacctcttgtgatggcatgctctgtgtcaggatcgatgagtctttagcttttctgtgtaacccttccattcgaaaattcaagatattgcctcctt 200  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4183556 agagttaccacttgtgatggcatggtctgtgttaggatcgatgagtctttagcttttctgtgtaacccttccattcgtaaattcaagatattgcctcctt 4183457  T
Q  201 tgataaatccaaaccaaaaatat 223  Q
    |||||||||||| ||||||||||    
T  4183456 tgataaatccaagccaaaaatat 4183434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4744495 - 4744275
Alignment:
Q  3 caatctcctctatttttagttccgccacatcctttaccagtttcacacagctcaataaccatcctctcattcttaatcttaagggaggctatgtttggag 102  Q
    |||||||||||||||| ||||| ||  ||||||||||||||||||    |||||||||||||| ||| ||||||||||||||||||| |||| || ||||    
T  4744495 caatctcctctattttcagttctgctgcatcctttaccagtttcaagtggctcaataaccatcgtctgattcttaatcttaagggagactatattgggag 4744396  T
Q  103 agttacctcttgtgatggcatgctctgtgtcaggatcgatgagtctttagcttttctgtgtaacccttccattcgaaaattcaagatattgcctcctttg 202  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4744395 agttaccacttgtgatggcatggtctgtgttaggatcgatgagtctttagcttttctgtgtaacccttccattcgtaaattcaagatattgcctcctttg 4744296  T
Q  203 ataaatccaaaccaaaaatat 223  Q
    |||||||||| ||||||||||    
T  4744295 ataaatccaagccaaaaatat 4744275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 51858125 - 51858229
Alignment:
Q  115 tgatggcatgctctgtgtcaggatcgatgagtctttagcttttctgtgtaacccttccattcgaaaattcaagatattgcctcctttgataaatccaaac 214  Q
    |||||||||||||||||| ||||| |||   ||||  ||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||    
T  51858125 tgatggcatgctctgtgttaggattgattcatcttctgctcttttgtgtaacccttccattagaaaattcaagatattgcctcctttaataaatccagac 51858224  T
Q  215 caaaa 219  Q
    |||||    
T  51858225 caaaa 51858229  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 51381980 - 51381898
Alignment:
Q  119 ggcatgctctgtgtcaggatcgatgagtctttagcttttctgtgtaacccttccattcgaaaattcaagatattgcctccttt 201  Q
    |||||||||||| |  | || ||||| ||||||||| || | || |||||||||||| ||||||| |||||||||||||||||    
T  51381980 ggcatgctctgttttggaatagatgaatctttagctcttttatgcaacccttccattagaaaatttaagatattgcctccttt 51381898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51763574 - 51763495
Alignment:
Q  1 ctcaatctcctctatttttagttccgccacatcctttaccagtttcacacagctcaataaccatcctctcattcttaatctta 83  Q
    |||||||||||||||||| ||||||||| |||||||| | ||||| |  ||||||| |   || |||||||||||||||||||    
T  51763574 ctcaatctcctctattttcagttccgccgcatcctttcctagttttaagcagctcatt---caccctctcattcttaatctta 51763495  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 51829257 - 51829349
Alignment:
Q  111 cttgtgatggcatgctctgtgtcaggatcgatgagtctttagcttttctgtgtaacccttccattcgaaaattcaagatattgcctcctttga 203  Q
    |||||||||||||||| ||| | ||| |  || | ||||||||| |  |||| |||||||||||  ||||||| |||||||||||||||||||    
T  51829257 cttgtgatggcatgctatgttttagggttaattactctttagctctcttgtgcaacccttccatcagaaaatttaagatattgcctcctttga 51829349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 51763411 - 51763375
Alignment:
Q  161 tgtaacccttccattcgaaaattcaagatattgcctc 197  Q
    ||||||||||||||| | |||||||||||||||||||    
T  51763411 tgtaacccttccattaggaaattcaagatattgcctc 51763375  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 771999 - 771956
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcctttg 202  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  771999 tgtggaacccttccattcaaaaattcaagatattgcctcctttg 771956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 2455424 - 2455467
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcctttg 202  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  2455424 tgtggaacccttccattggagaattcaagatattgcctcctttg 2455467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 13497790 - 13497829
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcc 198  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  13497790 tgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 2476236 - 2476288
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcctttgataaatcca 211  Q
    |||| |||||||||||| |||||||  || ||||||||||||||| |||||||    
T  2476236 tgtggaacccttccattagaaaatttcagctattgcctcctttgaaaaatcca 2476288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 2491676 - 2491724
Alignment:
Q  154 ttttctgtgtaacccttccattcgaaaattcaagatattgcctcctttg 202  Q
    ||||||||| |||||||||||| |||| || ||| ||||||||||||||    
T  2491676 ttttctgtggaacccttccattagaaagtttaagttattgcctcctttg 2491724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 12217602 - 12217646
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcctttga 203  Q
    |||| ||||||||||||||||  ||||||||||||||| ||||||    
T  12217602 tgtggaacccttccattcgaatgttcaagatattgcctactttga 12217646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 88709 - 88752
Alignment:
Q  159 tgtgtaacccttccattcgaaaattcaagatattgcctcctttg 202  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||    
T  88709 tgtggaacccttccatccgaaaattcaaggtattgcctcctttg 88752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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