View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0674_low_66 (Length: 247)
Name: NF0674_low_66
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27521376 - 27521516
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
27521376 |
aatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttg |
27521475 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521476 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27462059 - 27461919
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
27462059 |
aatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttg |
27461960 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
141 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
27461959 |
acagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18986159 - 18986019
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||| |
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| T |
18986159 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatgatgatggtgaacagagtttg |
18986060 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
141 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
18986059 |
acagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27482198 - 27482058
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
27482198 |
aatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttg |
27482099 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
141 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27482098 |
acagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25518543 - 25518400
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25518543 |
aatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatgatggtgaacggcgtttg |
25518444 |
T |
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| Q |
101 |
acagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
141 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25518443 |
acagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1758207 - 1758067
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1758207 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttg |
1758108 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatgaagcattgatgatgt |
141 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1758107 |
acagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27918709 - 27918583
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
27918709 |
aatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtgaactgcgtttg |
27918610 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatga |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
27918609 |
acagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 29569741 - 29569866
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
29569741 |
aatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatgatgatggtgaacggcgtttg |
29569840 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29569841 |
acagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 29568410 - 29568536
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29568410 |
aatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttg |
29568509 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatgatga |
127 |
Q |
| |
|
| |||||| |||||||||||||||||| |
|
|
| T |
29568510 |
aaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 29168314 - 29168171
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgatggtgaacggcgtttg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29168314 |
aatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatgatgatggtgaacgacgtttg |
29168215 |
T |
|
| Q |
101 |
acagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
141 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29168214 |
acagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29425355 - 29425232
Alignment:
| Q |
1 |
aatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagaagatgatgat---ggtgaacggcgt |
97 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
29425355 |
aatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgt |
29425256 |
T |
|
| Q |
98 |
ttgacagagttgttgtgagtgtga |
121 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
29425255 |
ttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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