View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_67 (Length: 246)

Name: NF0674_low_67
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_67
NF0674_low_67
[»] chr4 (1 HSPs)
chr4 (12-221)||(29456512-29456721)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 29456512 - 29456721
Alignment:
Q  12 gacatcatcagagtccggtatatagagattcgaggtagatgtttacagaactatttaaaaattcaagttgcataatttcttaaaacaaactgccaaatcg 111  Q
    |||||| || |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29456512 gacatcctcggagtcgagtatatagagattcgaggtagatgtttacagaactatttaaaagttcaagttgcataatttcttaaaacaaactgccaaatcg 29456611  T
Q  112 aaggtgtgcagaagaagtcctcaagttgcagttagatagctgcaatgcctaagattcaaataaaagaagatacttgcaagagaaattttttcatcgaagt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29456612 aaggtgtgcagaagaagtcctcaagttgcagttagatagctgcaatgcctaagattcaaataaaagaagatacttgcaagagaaattttttcatcgaagt 29456711  T
Q  212 tacaaagcac 221  Q
    ||||| ||||    
T  29456712 tacaaggcac 29456721  T

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