View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0674_low_76 (Length: 228)

Name: NF0674_low_76
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0674_low_76
NF0674_low_76
[»] scaffold0091 (3 HSPs)
scaffold0091 (151-228)||(29057-29134)
scaffold0091 (13-88)||(28917-28994)
scaffold0091 (13-75)||(24720-24782)
[»] chr6 (4 HSPs)
chr6 (151-228)||(14989413-14989490)
chr6 (153-228)||(14980301-14980376)
chr6 (13-75)||(14980460-14980522)
chr6 (151-188)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (151-228)||(13882274-13882351)
chr1 (151-228)||(51658700-51658777)
chr1 (13-75)||(13882464-13882526)
chr1 (16-74)||(51658854-51658912)
chr1 (166-219)||(1567113-1567166)
[»] scaffold0218 (2 HSPs)
scaffold0218 (152-228)||(14378-14454)
scaffold0218 (13-83)||(14237-14307)
[»] scaffold0003 (2 HSPs)
scaffold0003 (151-226)||(130795-130870)
scaffold0003 (13-75)||(130633-130695)
[»] chr3 (10 HSPs)
chr3 (154-228)||(16642300-16642374)
chr3 (153-228)||(4712838-4712913)
chr3 (151-228)||(14055075-14055152)
chr3 (151-228)||(14062816-14062893)
chr3 (13-75)||(16642133-16642195)
chr3 (155-219)||(13926896-13926960)
chr3 (13-75)||(4712997-4713059)
chr3 (13-75)||(14055222-14055284)
chr3 (13-75)||(14062983-14063045)
chr3 (16-53)||(14481801-14481838)
[»] chr7 (10 HSPs)
chr7 (151-228)||(16060512-16060589)
chr7 (151-228)||(48376787-48376864)
chr7 (13-88)||(16060374-16060449)
chr7 (13-75)||(9080206-9080268)
chr7 (151-219)||(4531797-4531865)
chr7 (13-70)||(16069010-16069067)
chr7 (13-68)||(48376637-48376692)
chr7 (151-188)||(9080338-9080375)
chr7 (166-212)||(37945878-37945924)
chr7 (151-183)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (13-88)||(28443-28518)
scaffold0063 (151-189)||(28342-28380)
[»] chr8 (5 HSPs)
chr8 (151-214)||(23657751-23657814)
chr8 (151-228)||(23658526-23658611)
chr8 (13-72)||(23657648-23657707)
chr8 (13-72)||(23658423-23658482)
chr8 (13-70)||(17862246-17862303)
[»] scaffold1269 (1 HSPs)
scaffold1269 (174-228)||(1-55)
[»] scaffold0061 (1 HSPs)
scaffold0061 (18-75)||(18099-18156)
[»] chr2 (2 HSPs)
chr2 (151-219)||(23656508-23656576)
chr2 (14-70)||(23907788-23907844)
[»] scaffold1043 (1 HSPs)
scaffold1043 (13-70)||(1427-1484)
[»] chr5 (3 HSPs)
chr5 (13-70)||(25756783-25756840)
chr5 (13-70)||(25790961-25791018)
chr5 (16-60)||(24832209-24832253)
[»] scaffold0319 (1 HSPs)
scaffold0319 (197-228)||(13608-13639)
[»] chr4 (1 HSPs)
chr4 (13-46)||(19728471-19728504)
[»] scaffold0170 (1 HSPs)
scaffold0170 (14-70)||(17250-17306)


Alignment Details
Target: scaffold0091 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 29057 - 29134
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 29134  T

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Target: scaffold0091; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtca--atatatatatttacacaccaccc 88  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 14989490 - 14989413
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14989413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 14980376 - 14980301
Alignment:
Q  153 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 14980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14980522 - 14980460
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcat 188  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 13882351 - 13882274
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 13882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 51658777 - 51658700
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 51658700  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 13882526 - 13882464
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  16 atcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatata 74  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 1567166 - 1567113
Alignment:
Q  166 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc 219  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatc 1567113  T

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Target: scaffold0218 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 14378 - 14454
Alignment:
Q  152 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14454  T

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Target: scaffold0218; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 14237 - 14307
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatatttacacac 83  Q
    |||| ||||||  |||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 130633 - 130695
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 16642300 - 16642374
Alignment:
Q  154 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 16642374  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 4712913 - 4712838
Alignment:
Q  153 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 4712838  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 14055152 - 14055075
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14055075  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 14062893 - 14062816
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14062816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 16642133 - 16642195
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  155 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 219  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 4713059 - 4712997
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14055284 - 14055222
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    ||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 14063045 - 14062983
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 14481838 - 14481801
Alignment:
Q  16 atcatcattcaagtcatcatcataattatacgtcgtca 53  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  14481838 atcatcattcaaatcatcatcataattatacatcgtca 14481801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 16060512 - 16060589
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatc 16060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 48376787 - 48376864
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 48376864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatatttacacaccaccc 88  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 9080206 - 9080268
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 4531865 - 4531797
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 219  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatc 4531797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 16069067 - 16069010
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    ||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 48376637 - 48376692
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaata 68  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcat 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  166 atataaacattatcatttctcatcgtatttatttaattacatatata 212  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  151 ctcatcatcactaacatataaacattatcattt 183  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: scaffold0063 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatatttacacaccaccc 88  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatc 189  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 23658526 - 23658611
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatc 23658611  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 23657648 - 23657707
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatata 72  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 23658423 - 23658482
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatata 72  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 17862303 - 17862246
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    ||||||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

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Target: scaffold1269 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 1 - 55
Alignment:
Q  174 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 228  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 55  T

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Target: scaffold0061 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 18156 - 18099
Alignment:
Q  18 catcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatatatatat 75  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  151 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 219  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 23907788 - 23907844
Alignment:
Q  14 acatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    |||||||||||||| | |||||||||| |||||||| ||| |||||| |||||||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtcaatata 23907844  T

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Target: scaffold1043 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1484 - 1427
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    ||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 25756840 - 25756783
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 25790961 - 25791018
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  16 atcatcattcaagtcatcatcataattatacgtcgtcactctcat 60  Q
    |||||||||||| |||||||||||||||||| || ||| ||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 13639 - 13608
Alignment:
Q  197 tttaattacatatatataatatcttcgtcatc 228  Q
    ||||||||||||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatc 13608  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 19728504 - 19728471
Alignment:
Q  13 gacatcatcattcaagtcatcatcataattatac 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatac 19728471  T

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Target: scaffold0170 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 17250 - 17306
Alignment:
Q  14 acatcatcattcaagtcatcatcataattatacgtcgtcactctcatagtcaatata 70  Q
    |||||||||||||| | |||||||||| |||||| | ||| |||||| |||||||||    
T  17250 acatcatcattcaaattatcatcataaatatacgccatcattctcatcgtcaatata 17306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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