View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0674_low_9 (Length: 459)
Name: NF0674_low_9
Description: NF0674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0674_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Original strand, 36978694 - 36979122
Alignment:
| Q |
10 |
ggacatcatcacagactctacatattgatttcgaattatacgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36978694 |
ggacaacatcacagactctacatattgattttgaattatgcgtcctaacaggctcagcctggttcttttgcaccttatcatccatcactactgttccctt |
36978793 |
T |
|
| Q |
110 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36978794 |
taatcctttcttaagaatattatctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttc |
36978893 |
T |
|
| Q |
210 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttccccccattaagatgggaattcaaggttatcttgctcg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36978894 |
agcttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcg |
36978993 |
T |
|
| Q |
310 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36978994 |
atgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgt |
36979093 |
T |
|
| Q |
410 |
tcctttagtttctactgtggctgatgatg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36979094 |
tcctttagtttctactgtggctgatgatg |
36979122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 366
Target Start/End: Original strand, 36979752 - 36979906
Alignment:
| Q |
212 |
cttctgcagagcagcttgcttctttgctttcaaagcagcttcacaactagccctgtgtttccccccattaagatgggaattcaaggttatcttgctcgat |
311 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
36979752 |
cttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaa |
36979851 |
T |
|
| Q |
312 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtag |
366 |
Q |
| |
|
||||||||| | || ||||| |||| |||||||| | ||| ||||||||| |||| |
|
|
| T |
36979852 |
gttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtag |
36979906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 36984396 - 36984462
Alignment:
| Q |
229 |
gcttctttgctttcaaagcagcttcacaactagccctgtgtttccccccattaagatgggaattcaa |
295 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
36984396 |
gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaa |
36984462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 438
Target Start/End: Original strand, 36996461 - 36996587
Alignment:
| Q |
312 |
gttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttc |
411 |
Q |
| |
|
||||||||| | || ||||| |||| ||||| || ||||| ||||||||| ||| || ||| || ||||| |||||||| ||||||||| |||||||| |
|
|
| T |
36996461 |
gttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtgtacaatcctttggaaactctccaccagctctgtcactctctgctgttc |
36996560 |
T |
|
| Q |
412 |
ctttagtttctactgtggctgatgatg |
438 |
Q |
| |
|
|||||||||| |||||| ||||||||| |
|
|
| T |
36996561 |
ctttagtttccactgtgactgatgatg |
36996587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 438
Target Start/End: Original strand, 36980522 - 36980712
Alignment:
| Q |
248 |
agcttcacaactagccctgtgtttccccccattaagatgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcc |
347 |
Q |
| |
|
|||||||| | || |||||||||||| |||||||| |||||| ||||| | ||| | ||||||||||||| | || | ||| |||| ||||||| | |
|
|
| T |
36980522 |
agcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctc |
36980621 |
T |
|
| Q |
348 |
tgcagttccttctgcgtagaactcttgagatac-tcttcaccagctttgtcactctttgctgttcctttagtttctactgtggctgatgatg |
438 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| || ||| ||||||| | ||||||| |||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
36980622 |
tgcacttccttctgtgtagaactc-cgaggaacttctccaccagccctttcactctctgctgttcctttggtttccactgtgactgatgatg |
36980712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 37000387 - 37000469
Alignment:
| Q |
237 |
gctttcaaagcagcttcacaactagccctgtgtttccccccattaagatgggaattcaaggttatcttgctcgatgttgttac |
319 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||||| |||||| || ||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
37000387 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac |
37000469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 438
Target Start/End: Original strand, 36995772 - 36995883
Alignment:
| Q |
327 |
aaagcgcaaggccactcttcctgcagttccttctgcgtagaactcttgagatactcttcaccagctttgtcactctttgctgttcctttagtttctactg |
426 |
Q |
| |
|
||||| |||| |||||||| ||||| | ||||||| |||||||||| || |||| ||| |||| || |||||| |||||||||||| ||||||| | |
|
|
| T |
36995772 |
aaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtttctatta |
36995871 |
T |
|
| Q |
427 |
tggctgatgatg |
438 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36995872 |
tggctgatgatg |
36995883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 36984318 - 36984401
Alignment:
| Q |
133 |
ctccactcttaacattggaattgaacttatcgctaacattcttctgtttcacctcctctttggactgatagatgttgagcttct |
216 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
36984318 |
ctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcctctttggccttgtagatttttagcttct |
36984401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 36986246 - 36986329
Alignment:
| Q |
285 |
tgggaattcaaggttatcttgctcgatgttgttaccgagcacaaagcgcaaggccactcttcctgcagttccttctgcgtagaa |
368 |
Q |
| |
|
|||||||||||| || ||| |||| |||||||||| | || ||||| |||| |||||||| ||||| ||||||||| |||||| |
|
|
| T |
36986246 |
tgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtgtagaa |
36986329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 916 times since January 2019
Visitors: 4397