View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_11 (Length: 261)
Name: NF0675_low_11
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 18783717 - 18783472
Alignment:
| Q |
16 |
ataaaaagttttatctcaaacatttcaaatatctgacgaaatttgcaatgtcaacnnnnnnnnctaagatttggtaccgatccatatagacagtgaaccg |
115 |
Q |
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| T |
18783717 |
ataaaaagttttatctcaaacatttcaaatatctgatgaaatttgcaatgtcaacaaaaaaaactaagatttggtaccgatccatatagacagtgaaccg |
18783618 |
T |
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| Q |
116 |
tgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaacattagcatcagataaaattaccta |
215 |
Q |
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| T |
18783617 |
tgtttggatcataatctggaagaccacgctgtttccttatgaatgacataactttatgttcaccttctccaggaacattagcatcagataaaattaccta |
18783518 |
T |
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| Q |
216 |
agtcaaaaaacattaaccaaattaataaacaatgaaatactactac |
261 |
Q |
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| T |
18783517 |
agtcaaaaaacattaaccaaattaataaacaatgaaatactactac |
18783472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 22872864 - 22872743
Alignment:
| Q |
92 |
ccgatccatatagacagtgaaccgtgtttggatcataatccggaagaccacgctgtttccttatgaatgacataattttatgttcaccttctccaggaac |
191 |
Q |
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|||||| ||||||||||||||||||| || |||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |
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| T |
22872864 |
ccgatcaatatagacagtgaaccgtgattagatcataatcaagaagaccacgttgtttgcttatgaatgacataattttatgttccccttctccatgaac |
22872765 |
T |
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| Q |
192 |
attagcatcagataaaattacc |
213 |
Q |
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| T |
22872764 |
attagcatcagatataattacc |
22872743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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