View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_13 (Length: 235)
Name: NF0675_low_13
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_13 |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 19880894 - 19880963
Alignment:
| Q |
21 |
agcagagaccttagaatgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtccatgt |
90 |
Q |
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| T |
19880894 |
agcagaaaccttagaatgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtccatgt |
19880963 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 19663942 - 19664006
Alignment:
| Q |
21 |
agcagagaccttagaatgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtc |
85 |
Q |
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| T |
19663942 |
agcagaaacattagcatgatggaacgattggcaaaactatacagaccatttgtgttttttaagtc |
19664006 |
T |
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Target: scaffold0599 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 7037 - 7091
Alignment:
| Q |
31 |
ttagaatgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtc |
85 |
Q |
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| T |
7037 |
ttagaaagttgcaacgatcggctaaactatacagaccatatgtgttttttaagtc |
7091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 11915286 - 11915340
Alignment:
| Q |
31 |
ttagaatgctgcaacgattggcaaaactatacaaaccatatgtattttttaagtc |
85 |
Q |
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| T |
11915286 |
ttagaaagttgcaacgatcggctaaactatacagaccatatgtgttttttaagtc |
11915340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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