View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_2 (Length: 454)
Name: NF0675_low_2
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_2 |
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| [»] scaffold0091 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 53523286 - 53523706
Alignment:
| Q |
14 |
agatattcgcttgaaacaccggctgcggcggcgacgaagcaagtcaaaaagaccagagacgttggttgttgtgaggtcggaaacacggacaaccgcggcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53523286 |
agatattcgcttgaaacaccggctgcggcggcgacgaagcaagtcaaaaagaccagagacgttggttgttgtgaggtcggaaacacggacaaccgcggcg |
53523385 |
T |
|
| Q |
114 |
gagacaaacgttacagttgtgaaac-tcgcaaccactaatgacctttaacctgctcgaattcgcagtcaccgccgattcgcggtcgggcgtccgccgtca |
212 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53523386 |
gagacaaacgttacagttgtgaaacctcgcgaccactaatgacctttaacctgctcgaattcgcagtcaccaccgattcgcggtcgggcgtccgccgtca |
53523485 |
T |
|
| Q |
213 |
ctactatcctacacatgtttgatgtcggaaaccccacaaaagaaccgatccagatcaaattccagattccattagatattaaaagagtgatttcatggtg |
312 |
Q |
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| T |
53523486 |
ccactatcctgcacgtgtttgatgtcggaaaccccacaaaagaaccgatccagatcaaattccagattccattagatattaaaagagtgatttcatggtg |
53523585 |
T |
|
| Q |
313 |
ggttcttgatttaaatctgagtattgattttaaaaattagctttttcatcacgaaggagaatggaataggaacaatttgcttggaagaaggaagatgaca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53523586 |
ggttcttgatttaaatctgagtattgattttaaaaattagctttttcatcacgaaggagaatggaataggaacaatttgcttggaagaaggaagatgaca |
53523685 |
T |
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| Q |
413 |
caaaagaagaaagtgatgatg |
433 |
Q |
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|| |||||||||||||||||| |
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| T |
53523686 |
cacaagaagaaagtgatgatg |
53523706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 3119 - 3294
Alignment:
| Q |
36 |
ctgcggcggcgacgaagcaagtcaaaaagaccagagacgttggttgttgtgaggtcggaaacacggacaaccgcggcggagacaaacgttacagttgtga |
135 |
Q |
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||||||||| |||||||||||| ||||| |||||| ||| |||||||||||||||||||||||| || |||| | || |||||||||| |||| |||| |
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| T |
3119 |
ctgcggcggtgacgaagcaagtaaaaaacaccagaaacggtggttgttgtgaggtcggaaacaccaacgaccgtagaggcgacaaacgttgcagtcgtga |
3218 |
T |
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| Q |
136 |
aactcgcaaccactaatgacctttaacctgctcgaattcgcagtcaccgccgattcgcggtcgggcgtccgccgtc |
211 |
Q |
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||| | | || || ||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
3219 |
aacccccgacaaccaataacctttcacctgctcgaagccgcagtcaccgccgattcacggtcaggcgtccgccgtc |
3294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 3363 - 3436
Alignment:
| Q |
294 |
aaagagtgatttcatggtgggttcttgatttaaatctg------agtattgattttaaaaattagctttttcat |
361 |
Q |
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|||||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
3363 |
aaagagtggtttcatggttggttcttgatttggatctggatatgagtattgattttaaaaattagctttttcat |
3436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 3505 - 3584
Alignment:
| Q |
360 |
atcacgaaggagaatggaataggaacaat------ttgcttggaagaaggaagatgacacaaaagaagaaagtgatgatg |
433 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||| |||||||| |
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| T |
3505 |
atcacgaaggagaatggaataggaacaggaacagcttgcgtggaagaaagaagataacacaaaagaagaaaatgatgatg |
3584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 26779434 - 26779260
Alignment:
| Q |
36 |
ctgcggcggcgacgaagcaagtcaaaaagaccagagacgttggttgttgtgaggtcggaaacacggacaaccgcggcggagacaaacgttacagttgtga |
135 |
Q |
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||||||||| ||| |||||||| ||||| |||||| ||| |||||||||||||||||||||||| || ||||| | || |||||||||| |||| |||| |
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| T |
26779434 |
ctgcggcggtgacaaagcaagtaaaaaacaccagaaacggtggttgttgtgaggtcggaaacaccaacgaccgcagaggcgacaaacgttgcagtcgtga |
26779335 |
T |
|
| Q |
136 |
aactcgcaaccactaatgacctttaacctgctcgaattcgcagtcaccgccgattcgcggtcgggcgtccgccgtc |
211 |
Q |
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||| | | || || ||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
26779334 |
aac-cccgacaaccaataacctttcacctgctcgaagccgcagtcaccgccgattcacggtcaggcgtccgccgtc |
26779260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 26779191 - 26779118
Alignment:
| Q |
294 |
aaagagtgatttcatggtgggttcttgatttaaatctg------agtattgattttaaaaattagctttttcat |
361 |
Q |
| |
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|||||||| ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
26779191 |
aaagagtggtttcatggttggttcttgatttggatctggatatgagtattgattttaaaaattagctttttcat |
26779118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 26779049 - 26778970
Alignment:
| Q |
360 |
atcacgaaggagaatggaataggaacaat------ttgcttggaagaaggaagatgacacaaaagaagaaagtgatgatg |
433 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||||||||| |||||||| |
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| T |
26779049 |
atcacgaaggagaatggaataggaacaggaacagcttgcgtggaagaaagaagataacacaaaagaagaaaatgatgatg |
26778970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 358
Target Start/End: Original strand, 33347414 - 33347445
Alignment:
| Q |
327 |
atctgagtattgattttaaaaattagcttttt |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
33347414 |
atctgagtattgattttaaaaattagcttttt |
33347445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 358
Target Start/End: Complemental strand, 35118098 - 35118067
Alignment:
| Q |
327 |
atctgagtattgattttaaaaattagcttttt |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
35118098 |
atctgagtattgattttaaaaattagcttttt |
35118067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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