View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_3 (Length: 453)
Name: NF0675_low_3
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 89 - 451
Target Start/End: Original strand, 49385472 - 49385834
Alignment:
| Q |
89 |
catcatcataagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
188 |
Q |
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| T |
49385472 |
catcatcacaagtcataacataaccattcttaccttctgcagcctcattattcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
49385571 |
T |
|
| Q |
189 |
agatcacatcagattcatctttcaaaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtgg |
288 |
Q |
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| T |
49385572 |
agatcacatcagattcatctttcaaaggatatcatgaaacaaatcaaacacaaatgtgtctgtctctacttcaaagaaacacaaacacatcacctagtgg |
49385671 |
T |
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| Q |
289 |
tgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctaca |
388 |
Q |
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| T |
49385672 |
tgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctaca |
49385771 |
T |
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| Q |
389 |
actaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgat |
451 |
Q |
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| T |
49385772 |
actaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgat |
49385834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 285 - 451
Target Start/End: Complemental strand, 6507830 - 6507664
Alignment:
| Q |
285 |
gtggtgaaaaaagaggaagaaggaaacaatcagaaccaggaaggtttcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccc |
384 |
Q |
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| T |
6507830 |
gtggcgaaaaaagaggcagaaaaaagcaagcagaaccaggtaagtttcttggtgtaaggagaagaccttggggtagatatgctgctgaaattagagatcc |
6507731 |
T |
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| Q |
385 |
tacaactaaagaaagacattggcttggtacttttgatactgctcaagaagctgctcttgcttatgat |
451 |
Q |
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| T |
6507730 |
tgcaactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgat |
6507664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 40001351 - 40001303
Alignment:
| Q |
140 |
tcaatccatattttctttgccattttctcagccatgtcaacctctaaaa |
188 |
Q |
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| T |
40001351 |
tcaatccatattttctttgccattttcttagccatgtcaacttctaaaa |
40001303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 43848378 - 43848271
Alignment:
| Q |
331 |
tcttggtgttaggagaagaccttggggtagatatgctgctgaaattagagaccctacaactaaagaaagacattggcttggtacttttgatactgctcaa |
430 |
Q |
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| T |
43848378 |
tcttggtgttagaaaaagaccatggggaagatatgcagctgaaattaggaacccttataccaaagagagacattggttaggcacatttgacactgcagaa |
43848279 |
T |
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| Q |
431 |
gaagctgc |
438 |
Q |
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|||||||| |
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| T |
43848278 |
gaagctgc |
43848271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 451
Target Start/End: Original strand, 25986002 - 25986050
Alignment:
| Q |
403 |
ttggcttggtacttttgatactgctcaagaagctgctcttgcttatgat |
451 |
Q |
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|||||||||||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
25986002 |
ttggcttggtacttttgacactgctgaagaagctgctttggcttatgat |
25986050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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