View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_6 (Length: 283)
Name: NF0675_low_6
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_6 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 37570000 - 37569822
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaattcgtgagtggtgcatccttaccaccactaacactaccac |
159 |
Q |
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| T |
37570000 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagcgaattcgtgagtggtgcatccttaccaccactaacactaccac |
37569901 |
T |
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| Q |
160 |
tatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcat |
238 |
Q |
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| T |
37569900 |
tatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactcat |
37569822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 37569451 - 37569388
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaattcg |
123 |
Q |
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| T |
37569451 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagcgaattcg |
37569388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 37569684 - 37569590
Alignment:
| Q |
142 |
caccactaacactaccactatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacgacgcagcactc |
236 |
Q |
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| T |
37569684 |
caccactacgactaccagtatctggttgcacaattttattctcaaaaccatttttcaatctactaactaaaggactttgaaatgacgcagcactc |
37569590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 37570219 - 37570149
Alignment:
| Q |
156 |
ccactatcaagttgcgcaactttattctcagaacccatgtgcaacctaccaactaaaggactttgaaacga |
226 |
Q |
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| T |
37570219 |
ccactatctggttgcacaaatttactctcaaaaccattcttcaacctaccaactaaaggactttgaaacga |
37570149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 30257 - 30318
Alignment:
| Q |
60 |
ctaacaagacctttagaagaaatagtaacttttcttccagaacctgtcttgaaaagagaatt |
121 |
Q |
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| T |
30257 |
ctaacaagaccattagaagatagagtaacttttcttcctgaagctgtcttgaaaagagaatt |
30318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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