View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0675_low_7 (Length: 281)
Name: NF0675_low_7
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0675_low_7 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 91942 - 91755
Alignment:
| Q |
37 |
gtagcaaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcgaa-ggtcatgatttcat |
135 |
Q |
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| T |
91942 |
gtagccaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggcccagtacttgcgaaaggtcatgatttcat |
91843 |
T |
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| Q |
136 |
caagaaatcacaggtaagtttaattttgttgatagataatgtagttggcactatttattattttgtttagatctatcatactcttatt |
223 |
Q |
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| T |
91842 |
caagaaatcacaggtaagtttaattttgttgatagataatgtagttggcactatttattattttgtttagatctataatactcttatt |
91755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 5669619 - 5669526
Alignment:
| Q |
70 |
aagctttgcttgccactggcctaactgaggaaattggtccagtacttgc-gaaggtcatgatttcatcaagaaatcacaggtaagtttaatttt |
162 |
Q |
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| T |
5669619 |
aagctttgcttgccactaacctaactgaggatattggtccaacactggcaaaaggacatgaattcatcaagaaatctcaggtatgcttaatttt |
5669526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 5690279 - 5690183
Alignment:
| Q |
67 |
ttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgc-gaaggtcatgatttcatcaagaaatcacaggtaagtttaatttt |
162 |
Q |
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| T |
5690279 |
ttcaagctttgcttgccactaacctaattgaggatattggtccaacacttgcaaaaggacataaattcatcaagaattctcaggtatgtttagtttt |
5690183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 165208 - 165325
Alignment:
| Q |
47 |
atggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcgaa-ggtcatgatttcatcaagaaatca |
145 |
Q |
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| T |
165208 |
atgggatactagttttgccattcaagctttgcttgccaccaacctaattgaggaaactgctcctgcacttgtaaaaggacatgatttcatcaagaaatct |
165307 |
T |
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| Q |
146 |
caggtaagtttaattttg |
163 |
Q |
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| T |
165308 |
caggtatgcttaattttg |
165325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 104592 - 104719
Alignment:
| Q |
37 |
gtagcaaaggatggaatactagtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcgaa-ggtcatgatttcat |
135 |
Q |
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| T |
104592 |
gtagccaagaatgggatgctggttttgccgttcaagctttgcttgccgctaacctaaatgatgaaatcgaacctgcacttgccaaaggacatgatttcat |
104691 |
T |
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| Q |
136 |
caagaaatcacaggtaagtttaattttg |
163 |
Q |
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| T |
104692 |
taagaaatctcaggtatgtttaattttg |
104719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 13053182 - 13053276
Alignment:
| Q |
58 |
gtttttctgttcaagctttgcttgccactggcctaactgaggaaattggtccagtacttgcga-aggtcatgatttcatcaagaaatcacaggta |
151 |
Q |
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| T |
13053182 |
gttttgctgttcaagctttgcttgccacaaacttaattgaagaaattggtcctgcacttgccagaggacatgacttcatcaagaaatctcaggta |
13053276 |
T |
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