View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0675_low_9 (Length: 268)

Name: NF0675_low_9
Description: NF0675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0675_low_9
NF0675_low_9
[»] chr7 (4 HSPs)
chr7 (33-220)||(8331820-8332007)
chr7 (52-174)||(17020932-17021054)
chr7 (33-155)||(14573380-14573502)
chr7 (54-158)||(39319258-39319362)
[»] chr1 (4 HSPs)
chr1 (33-220)||(40771072-40771259)
chr1 (53-201)||(20217218-20217366)
chr1 (54-159)||(19287537-19287642)
chr1 (56-159)||(27621414-27621517)
[»] chr6 (3 HSPs)
chr6 (28-203)||(19777515-19777690)
chr6 (54-159)||(20529163-20529268)
chr6 (104-216)||(19785364-19785476)
[»] chr4 (3 HSPs)
chr4 (54-159)||(4254811-4254916)
chr4 (64-203)||(33548857-33548996)
chr4 (64-203)||(26229357-26229495)
[»] chr3 (2 HSPs)
chr3 (54-159)||(21897781-21897886)
chr3 (54-158)||(14802874-14802978)
[»] chr2 (1 HSPs)
chr2 (76-219)||(23961420-23961563)
[»] scaffold0975 (1 HSPs)
scaffold0975 (56-203)||(3516-3663)
[»] scaffold0064 (1 HSPs)
scaffold0064 (56-203)||(669-816)
[»] chr8 (1 HSPs)
chr8 (56-203)||(23050677-23050824)
[»] scaffold0014 (1 HSPs)
scaffold0014 (33-203)||(134015-134185)
[»] scaffold0003 (1 HSPs)
scaffold0003 (52-174)||(118980-119102)
[»] chr5 (2 HSPs)
chr5 (53-189)||(143631-143767)
chr5 (53-189)||(18059338-18059474)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 8331820 - 8332007
Alignment:
Q  33 atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt 132  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8331820 atgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatt 8331919  T
Q  133 tcctaaatatgtgtaagacataagtgggtttgatgtaatattgttaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 220  Q
    |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  8331920 tcctaattatgtgtaagacataagtgggtttgatgtaatattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 8332007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 17021054 - 17020932
Alignment:
Q  52 ggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagac 151  Q
    ||||||||| ||||| ||||||| ||||||||||||  |||  | |||||| ||||| | || | ||  ||||| ||||||||||| |||||||||||||    
T  17021054 ggaagtagttaatctgtgataacgtggatattcgttatttggtgcagaaccgttgaagagtttgattatgaatatactatttcctacatatgtgtaagac 17020955  T
Q  152 ataagtgggtttgatgtaatatt 174  Q
    || ||||| ||||||||||||||    
T  17020954 attagtggatttgatgtaatatt 17020932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 14573502 - 14573380
Alignment:
Q  33 atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt 132  Q
    ||||||||||| | ||||||||||||| |||||||||||| | ||||||||   | ||||| | ||| |  ||||| || | | ||||||||||||||||    
T  14573502 atgtaacatctttgagattggaagtagccaatctatgatagcgtggatatttaatggttgttgcagaccatttgaaaatgtcgatttggaatacactatt 14573403  T
Q  133 tcctaaatatgtgtaagacataa 155  Q
    || ||||||||| || |||||||    
T  14573402 tcttaaatatgtttaggacataa 14573380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 39319258 - 39319362
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    |||||||||||||||| |||| | ||||||| ||| |||  |||||||||| |||||||| | |||| |||  |||||   ||||||||||| |||||||    
T  39319258 aagtagtcaatctatggtaacgtcgatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcagctaaatatgtgaaagacat 39319357  T
Q  154 aagtg 158  Q
    |||||    
T  39319358 aagtg 39319362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 40771259 - 40771072
Alignment:
Q  33 atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt 132  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40771259 atgtaacatctctaagattggaagtagtcaatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatt 40771160  T
Q  133 tcctaaatatgtgtaagacataagtgggtttgatgtaatattgttaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 220  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  40771159 tcctaaatatgtgtaagacataagtgggtttgatgtaaaattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 40771072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 20217218 - 20217366
Alignment:
Q  53 gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca 152  Q
    |||||||| |||||||| || | |||||||||  || |||| ||||||||| |||| |||| | |||| || |||||||| |||||||| ||||||||||    
T  20217218 gaagtagttaatctatgctaccttggatattcaatttttgttgtagaaccactgaaaattttgatttgaaaaacactattacctaaatacgtgtaagaca 20217317  T
Q  153 taagtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacc 201  Q
    ||||||| |||| ||| ||||| |  ||||| | |||||||||||||||    
T  20217318 taagtggatttgttgttatattatagaaattacggaattcgtgccaacc 20217366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 19287537 - 19287642
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    ||||||||||| |||| |||| ||||||||| ||| |||  |||||||||| |||||||| | |||| |||  |||||  |||||||||||| |||||||    
T  19287537 aagtagtcaatatatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcacctaaatatgtgaaagacat 19287636  T
Q  154 aagtgg 159  Q
    ||||||    
T  19287637 aagtgg 19287642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 27621517 - 27621414
Alignment:
Q  56 gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa 155  Q
    |||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| ||||   |||||||   ||||||  ||| ||||||| |||||||||    
T  27621517 gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa 27621418  T
Q  156 gtgg 159  Q
    ||||    
T  27621417 gtgg 27621414  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 19777690 - 19777515
Alignment:
Q  28 ataatatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaataca 127  Q
    |||| ||||||||||| ||||  | ||||||||||||| |||||| | ||||||||| |||||||  ||||| ||  |||| |||||  ||||||||  |    
T  19777690 ataaaatgtaacatctttaagtcttgaagtagtcaatcgatgatagcgtggatattcatttgttggtgtagatccggtgaaaatttgaatttggaatgta 19777591  T
Q  128 ctatttcctaaatatgtgtaagacataagtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||| | || ||||||||||| |||||| ||||    
T  19777590 ctatttcctaaatatgtgtaagacataagtaggtttgatataatattataaacatttctgaattggtgccatcctt 19777515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 20529163 - 20529268
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    |||||||||||||||| |||  ||||||||| ||| |||  |||||||||| |||||||| | |||||||||||||||  |||||||||||| |||||||    
T  20529163 aagtagtcaatctatggtaatgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat 20529262  T
Q  154 aagtgg 159  Q
    ||||||    
T  20529263 aagtgg 20529268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 19785476 - 19785364
Alignment:
Q  104 ttgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattgttaaaa-tttctgaattcgtgccaacct 202  Q
    ||||| || ||| |||||||||||||||||||||||||||| || ||||||| ||   ||| | |||| ||| ||||| ||| |||| ||||||||||||    
T  19785476 ttgaaaatgtggatttggaatacactatttcctaaatatgtttaggacataattgaaattgttttaat-ttgataaaagtttttgaactcgtgccaacct 19785378  T
Q  203 tgtgtgagtattgg 216  Q
    ||| | ||||||||    
T  19785377 tgtttcagtattgg 19785364  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 4254811 - 4254916
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    |||||||||||||||| |||| ||||||||| ||| |||  |||||||||| |||||||| | |||||||||||||||  |||||||||||| |||||||    
T  4254811 aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat 4254910  T
Q  154 aagtgg 159  Q
    ||||||    
T  4254911 aagtgg 4254916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 33548996 - 33548857
Alignment:
Q  64 tctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt 163  Q
    ||||||||| | ||||||||| ||| |||  |||||||||||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| |||    
T  33548996 tctatgatatcgtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt 33548897  T
Q  164 gatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    || || ||||  | ||||  |||||||| |||||||||||    
T  33548896 gaagttatatgataaaaaaatctgaattggtgccaacctt 33548857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 26229495 - 26229357
Alignment:
Q  64 tctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt 163  Q
    ||||||||| | ||||||||| ||| | || |||||||||||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| |||    
T  26229495 tctatgatatcgtggatattcatttttggt-gtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt 26229397  T
Q  164 gatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    || || ||||  | ||||  |||||||| |||||||||||    
T  26229396 gaagttatatgataaaaaaatctgaattggtgccaacctt 26229357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 21897781 - 21897886
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    |||||||||||||||| |||| ||||||||| ||| |||  |||||||||| |||||||| | |||||||||||||||  |||||||||||| |||||||    
T  21897781 aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat 21897880  T
Q  154 aagtgg 159  Q
    ||||||    
T  21897881 aagtgg 21897886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 14802874 - 14802978
Alignment:
Q  54 aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat 153  Q
    |||||||||| ||||| |||| ||||||||| |||||||  |||||| ||||||||||||   |||||||||  ||||| |||||||||||| |||||||    
T  14802874 aagtagtcaacctatggtaacttggatattcatttgttggtgtagaagcattgaatatttttatttggaatatgctattacctaaatatgtgaaagacat 14802973  T
Q  154 aagtg 158  Q
    |||||    
T  14802974 aagtg 14802978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 23961420 - 23961563
Alignment:
Q  76 tggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattg 175  Q
    ||||||||| ||| |||  |||||||||||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| ||||| |  ||||      
T  23961420 tggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaaggtatatga 23961519  T
Q  176 ttaaaatttctgaattcgtgccaaccttgtgtgagtattggcat 219  Q
    | ||||  |||||||| ||||||||||| ||| |||||||||||    
T  23961520 taaaaaaatctgaattggtgccaaccttctgtaagtattggcat 23961563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0975 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0975
Description:

Target: scaffold0975; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 3663 - 3516
Alignment:
Q  56 gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa 155  Q
    |||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| ||||   |||||||   ||||||  ||| ||||||| |||||||||    
T  3663 gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa 3564  T
Q  156 gtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    |||| ||  |||| | ||  | |||||  |||||||||||||||||||    
T  3563 gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt 3516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 816 - 669
Alignment:
Q  56 gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa 155  Q
    |||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| | ||   |||||||   ||||||  ||| ||||||| |||||||||    
T  816 gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaaatttaatttggaaatgactattatctagatatgtgaaagacataa 717  T
Q  156 gtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    |||| ||  |||| | ||  | |||||  |||||||||||||||||||    
T  716 gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt 669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 23050824 - 23050677
Alignment:
Q  56 gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa 155  Q
    |||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| ||||   |||||||   ||||||  ||| |||| || |||||||||    
T  23050824 gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatatgaaagacataa 23050725  T
Q  156 gtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
    |||| ||  |||| | ||  | |||||  |||||||||||||||||||    
T  23050724 gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt 23050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 134185 - 134015
Alignment:
Q  33 atgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatt 132  Q
    |||||| |||| |||||  |||||||||   |||||||||   ||||||||| ||| |||  |||||| ||||||| |||| | ||||||||  ||||||    
T  134185 atgtaagatctttaagacaggaagtagtatgtctatgatattgtggatattcattttttggtgtagaatcattgaagattttgatttggaatgtactatt 134086  T
Q  133 tcctaaatatgtgtaagacataagtgggtttgatgtaatattgttaaaatttctgaattcgtgccaacctt 203  Q
     || ||||||||| ||||||||||||| ||||| || ||||  | ||||  | |||||| |||||||||||    
T  134085 acccaaatatgtgaaagacataagtggatttgaagttatatgataaaaaaatatgaattggtgccaacctt 134015  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 118980 - 119102
Alignment:
Q  52 ggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagac 151  Q
    ||||||||| ||||| ||||||| ||||||||| ||  |||  | |||||| ||||| | || | ||  ||||| ||||| ||||| |||||||||||||    
T  118980 ggaagtagttaatctgtgataacgtggatattcattatttggtgcagaaccgttgaagagtttgattatgaatatactatgtcctacatatgtgtaagac 119079  T
Q  152 ataagtgggtttgatgtaatatt 174  Q
    || ||||| ||||||||||||||    
T  119080 attagtggatttgatgtaatatt 119102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 143631 - 143767
Alignment:
Q  53 gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca 152  Q
    |||||||| ||| ||||||| | ||||||||| ||  |||  |||||||| ||||| | || | |  |||||| ||||||||||| ||||||  ||||||    
T  143631 gaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagaca 143730  T
Q  153 taagtgggtttgatgtaatattgttaaaatttctgaa 189  Q
    | ||||| |||||||| ||||| | | ||||||||||    
T  143731 ttagtggatttgatgttatattataataatttctgaa 143767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 18059338 - 18059474
Alignment:
Q  53 gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca 152  Q
    |||||||| ||| ||||||| | ||||||||| ||  |||  |||||||| ||||| | || | |  |||||| ||||||||||| ||||||  ||||||    
T  18059338 gaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttgatcaggaatatactatttcctacatatgtaaaagaca 18059437  T
Q  153 taagtgggtttgatgtaatattgttaaaatttctgaa 189  Q
    | ||||| |||||||| ||||| | | ||||||||||    
T  18059438 ttagtggatttgatgttatattataataatttctgaa 18059474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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