View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0676_high_13 (Length: 201)
Name: NF0676_high_13
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 21672349 - 21672498
Alignment:
| Q |
34 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccacca |
133 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||| ||| ||| ||| ||||| |||||| ||| |||||| || |
|
|
| T |
21672349 |
tatactatacacagtctcttttcaactcggcggtgacggcggcatacaccagcaacctgacgttattgtgacaacatcatggcgtaagatttaaccatca |
21672448 |
T |
|
| Q |
134 |
cgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaatt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21672449 |
tgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaatt |
21672498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 39406753 - 39406601
Alignment:
| Q |
32 |
attatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccac |
131 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||| |||| ||| | |||||||||||||||||| |||||| |
|
|
| T |
39406753 |
attatactatacacggtctcttttcaactcggcggcgactgcggcgtacaccggcaacctgacattattgtgatagcatcagggcgtaggatttaaccat |
39406654 |
T |
|
| Q |
132 |
cacgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattg |
184 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39406653 |
cacaaagtggttattttcgatctcagtgatgaagctttgctcgttcgaaattg |
39406601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 50430994 - 50430858
Alignment:
| Q |
34 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatca-gggcgtaggatgtaaccacc |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||| | |||| ||| ||||||| ||| ||||| ||| ||||||| |||| | | |
|
|
| T |
50430994 |
tatactatacaccgtctcttttcaactcggcggcgacggcggcgtacacaaacaacttgacgttactgtgacaacatcaggggtgtaggatttaacaatc |
50430895 |
T |
|
| Q |
133 |
acgaagtggttattttcgatctcagtgatgaagtttt |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50430894 |
acgaagtggttattttcgatctcagtgatgaagtttt |
50430858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1516 times since January 2019
Visitors: 4421