View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0676_high_3 (Length: 521)
Name: NF0676_high_3
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Original strand, 34231820 - 34232296
Alignment:
| Q |
16 |
attacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231820 |
attacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatt |
34231919 |
T |
|
| Q |
116 |
tatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatat |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231920 |
tatatctatcaaacaatcaacttacagggcatatcagtgcaatctcgtcctattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatat |
34232019 |
T |
|
| Q |
216 |
tccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34232020 |
tccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaa |
34232119 |
T |
|
| Q |
316 |
aatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34232120 |
aatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgtcagttacaatttttctcatctaagggaattggatttgt |
34232219 |
T |
|
| Q |
416 |
cttctatcaacttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataac |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34232220 |
cttctatcaacttgacaaactttcccatattatcagaaaaattcctaagtttggattattttgatttgtccaataac |
34232296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 34239576 - 34239975
Alignment:
| Q |
20 |
caggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttata |
119 |
Q |
| |
|
||||||||||| ||||| || |||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| || | | || |
|
|
| T |
34239576 |
caggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcctccttgttatctttgccttctttggtacttctgta |
34239675 |
T |
|
| Q |
120 |
tctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattcca |
219 |
Q |
| |
|
|||||||||||||| | ||||||||| |||||||| |||||| || ||||| |||||| |||| |||| || |||||||||||||| |||||||| |
|
|
| T |
34239676 |
tctatcaaacaatcgacttacagggcctatcagtgaaatctcatcatattccttagagtatctatctctatgcaacaacaagctacaaggtgatattcca |
34239775 |
T |
|
| Q |
220 |
gaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatt |
319 |
Q |
| |
|
| |||||||||||||||| ||| || | | || |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
34239776 |
aattcaattttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgttgtcaattttcaagactttacaaaacttcaaaaat |
34239875 |
T |
|
| Q |
320 |
tgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttc |
419 |
Q |
| |
|
|| ||||| ||||||||||||| |||| ||||||||||||| |||||||| |||||||| |||| |||||||||| |||| |||||||||| ||||| |
|
|
| T |
34239876 |
tggattctctgtccctttcacataatagccaattatcactaaactttgaatacaatgttacttaccatttttctcaactaacaaaattggatttgtcttc |
34239975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 65 - 445
Target Start/End: Complemental strand, 42129914 - 42129534
Alignment:
| Q |
65 |
taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc |
164 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||| | ||||| ||||||||| |||| ||||| ||||||||| ||||||||| || |
|
|
| T |
42129914 |
taaatggaacaattccttcctccttgttatctttgccgtctttggttcatttagttctatcaaataatcgtcttacaaggcatatcactgcaatctcatc |
42129815 |
T |
|
| Q |
165 |
gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca |
264 |
Q |
| |
|
||||| ||| || ||| ||||| |||| |||||||||||||||||||||||| |||| ||||||||||||| ||| ||| || | ||||||||||| |
|
|
| T |
42129814 |
atattccttaaagaagctagatctaagcggcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatctatca |
42129715 |
T |
|
| Q |
265 |
tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacct |
364 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||| |||||||||| ||||| | || |||| |||||||| |||| ||||||||| |||| | |
|
|
| T |
42129714 |
tcaaacaacttgagtgatgttattgattttcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataatagccaattatcattaacat |
42129615 |
T |
|
| Q |
365 |
ttgaatccaatgttagttacaatttttctcatctaagggaattggatttatcttctatcaacttgacaaactttcccatat |
445 |
Q |
| |
|
||||| ||||||| | ||||||||||||| ||||| |||||||||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
42129614 |
ttgaacccaatgtcaattacaatttttcttatctatcaaaattggatttgtcttctatcaatttgacagaatttcccatat |
42129534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 113 - 420
Target Start/End: Original strand, 41712663 - 41712970
Alignment:
| Q |
113 |
atttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaa |
212 |
Q |
| |
|
||||| |||||||||| || | | ||| ||||||||||| ||||||||| || ||||| ||||||| ||| ||||| ||| ||||| ||| ||||||| |
|
|
| T |
41712663 |
atttagatctatcaaataaccgacttatagggcatatcattgcaatctcatcatattccttagaggagctatatctattcggcaacaaactagaaggcaa |
41712762 |
T |
|
| Q |
213 |
tattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt |
312 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || || | |||| ||||||||||||||||| ||||||||||| |||||||| |||| | ||||| |
|
|
| T |
41712763 |
tattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtgttgttgattttcaatacttctccgaactt |
41712862 |
T |
|
| Q |
313 |
caaaat-ttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggat |
411 |
Q |
| |
|
|||||| | ||| ||| |||||||||||| |||| ||||| ||||||| ||||||||||| ||| | ||||||||||||||| |||| ||||||||| |
|
|
| T |
41712863 |
caaaatctagta-tctctgtccctttcacttaataatcaattgtcactaaactttgaatccattgtcaattacaatttttctcaactaatagaattggat |
41712961 |
T |
|
| Q |
412 |
ttatcttct |
420 |
Q |
| |
|
||||||||| |
|
|
| T |
41712962 |
ttatcttct |
41712970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 196 - 393
Target Start/End: Original strand, 41571205 - 41571402
Alignment:
| Q |
196 |
aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttc |
295 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||| || || | || || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41571205 |
aacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaatttta |
41571304 |
T |
|
| Q |
296 |
aacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttct |
393 |
Q |
| |
|
|| ||||| |||||||||||||||| ||||| ||||||||||||| |||| |||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
41571305 |
aatacttttccaaacttcaaaatttgaattctctgtccctttcacataatagtcaattatcaccgaactttgaatccaatgtcagttacaatttttct |
41571402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 298
Target Start/End: Complemental strand, 42124540 - 42124306
Alignment:
| Q |
64 |
ctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgt |
163 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||||||| |||| || |||| |||||||| | |||| | |||||||||||||||||| ||| || | |
|
|
| T |
42124540 |
ctaaatggaacagttccttcctccttgttatctttgccttctttggcaattttagatctatcatataatcgacttacagggcatatcagtgaaatatcat |
42124441 |
T |
|
| Q |
164 |
cgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatc |
263 |
Q |
| |
|
| ||||| ||| | |||| |||| || |||| |||||||||||||||||| || || ||||||||||| ||| || || ||| |||||| |
|
|
| T |
42124440 |
catattctttaaacatgctaactctaagcaacaacaggctacaaggcaatattcctgagtccattttcaacctaacaaaactatctcacttaattctatc |
42124341 |
T |
|
| Q |
264 |
atcaaacaacttgagtggtgttgtcaattttcaac |
298 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
42124340 |
ttcgaacgacttgagtggtcttgtcaattttcaac |
42124306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 41432439 - 41432339
Alignment:
| Q |
203 |
tacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactt |
302 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| | || || |||||| ||||| |||||||||||| ||||||||||| ||| ||| |
|
|
| T |
41432439 |
tacaaggaaatattccagaatcacttttcaaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtcaattttaaactctt |
41432340 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
41432339 |
t |
41432339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 63 - 382
Target Start/End: Complemental strand, 12249515 - 12249196
Alignment:
| Q |
63 |
tctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcg |
162 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||| |||| | || || | || |||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
12249515 |
tctaaacggaacaattcctcccaccttgttatctttgccttctttggaacatctagagctgtcaaacaatcgatttacaggacatatcagtgcaatctca |
12249416 |
T |
|
| Q |
163 |
tcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctat |
262 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||| || || || | ||||| ||| |
|
|
| T |
12249415 |
tcgtattcgttagatacgctatatctatctggtaacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttat |
12249316 |
T |
|
| Q |
263 |
catcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaatttgtattctttgtccctttcacagaatacacaattatcactaac |
362 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| || | ||||||||||||| |||| |||||||||||||| |
|
|
| T |
12249315 |
catcaaacaacttgagtggtgttgttgattttcaactcttttccaaacttcattggttgttttttctgtccctttcacataatagccaattatcactaac |
12249216 |
T |
|
| Q |
363 |
ctttgaatccaatgttagtt |
382 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
12249215 |
ctttgaatccaatgtcagtt |
12249196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 8524116 - 8523714
Alignment:
| Q |
18 |
tacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgttatctttgcctcgtttgctaaattta |
117 |
Q |
| |
|
||||||| ||||| ||||| | |||| || |||||||||||| ||||| || ||||||||| |||| |||||||| ||||| ||||||| ||| |
|
|
| T |
8524116 |
tacaggtcttcaaaagctaactaatttgcgattaaatgacaacttgctaaatggtacaattcctccctccttgttatccttgccatttttgctagtatta |
8524017 |
T |
|
| Q |
118 |
tatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtcgtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattc |
217 |
Q |
| |
|
|| ||||||| |||||| |||||||| ||||||| |||||||| || ||||| |||||| |||| |||| | |||| ||||||||||||||||| |
|
|
| T |
8524016 |
gatttatcaaataatcaacttacagggaatatcagcgcaatctcatcatattccttagagtttctatctctaagtaacaacaggctacaaggcaatattc |
8523917 |
T |
|
| Q |
218 |
cagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttcaacactttggcaaacttcaaaa |
317 |
Q |
| |
|
||||||| ||||||||||||| ||| || | | |||||||||||||||||||||||||||||||||||||||| ||| || || ||| |||||| | |
|
|
| T |
8523916 |
cagaatccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaatttccaaaacatttccaaccttcaaca |
8523817 |
T |
|
| Q |
318 |
tttgtattctttgtccctttcacagaatacacaattatcactaacctttgaatccaatgttagttacaatttttctcatctaagggaattggatttatct |
417 |
Q |
| |
|
|||| | | |||| |||||| | |||| ||||||||| ||| ||||||||||| ||| | ||| | ||||| | |||||| |||||||| ||| ||| |
|
|
| T |
8523816 |
tttgaaatttttgcagctttcagataatagccaattatcagtaaactttgaatccagtgtcaattatagtttttttgatctaatggaattgggtttgtct |
8523717 |
T |
|
| Q |
418 |
tct |
420 |
Q |
| |
|
||| |
|
|
| T |
8523716 |
tct |
8523714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 65 - 377
Target Start/End: Original strand, 25522086 - 25522398
Alignment:
| Q |
65 |
taaacggaacaattccttcctctttgttatctttgcctcgtttgctaaatttatatctatcaaacaatcaaattacagggcatatcagtgcaatctcgtc |
164 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||| | ||||||| ||||||||||| ||| || |
|
|
| T |
25522086 |
taaatggaacaattccttcctctttgttatctttgccttctttggtatatttatatctatctaacaatcgacttacaggatctatcagtgcaacctcatc |
25522185 |
T |
|
| Q |
165 |
gtattcgttagaggctctaaatctaggcggtaacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatca |
264 |
Q |
| |
|
||||| |||||| | |||||||| | ||||||||||||||||||||||||||||| |||||||| ||| ||| || || || |||||| |
|
|
| T |
25522186 |
atattccttagagagtttaaatctatacaacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatct |
25522285 |
T |
|
| Q |
265 |
tcaaacaacttgagtggtgttgtcaattttcaacactttggcaaactt-caaaatttgtattctttgtccctttcacagaatacacaattatcactaacc |
363 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||||||| ||||||| |||| || ||| ||| ||||||||| |||||| ||||| ||||||| | |
|
|
| T |
25522286 |
ttaaacgacttgagtggttttgtcaattttcaacacttttccaaacttacaaatcttcgatt-tttatccctttcatggaatactcaattgtcactaaac |
25522384 |
T |
|
| Q |
364 |
tttgaatccaatgt |
377 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
25522385 |
ttcgaatccaatgt |
25522398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 11119042 - 11118949
Alignment:
| Q |
201 |
gctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaatttt |
294 |
Q |
| |
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11119042 |
gctacaaggcaatattccagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaatttt |
11118949 |
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