View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_high_5 (Length: 387)
Name: NF0676_high_5
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 26875496 - 26875185
Alignment:
| Q |
30 |
atgacaagagaaaacagagaaaagaggcacacaatttctgaactaaaggtacatttcgctggaaatacaattaacctatttaatttccgtatcattttta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26875496 |
atgacaagagaaaacagagaaaagaggcacacaatttctgaactaaaggtacatttcgctggaaatacaattaacctatttaatttccgtatcattttta |
26875397 |
T |
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| Q |
130 |
ccagattttaggcaaatccttgtttttctaaacattgccttgagaacaaggtcgtttgtggttctttggcatagatcaaatcaaaataatactcatgaat |
229 |
Q |
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| T |
26875396 |
ccagattttaggcaaatccttgtttttctaaacattgccttgagaacaaggtcgtttgtggttctttggcatagatcaaatcaaaataatactcat---- |
26875301 |
T |
|
| Q |
230 |
gaataagtgtactattaattattgtcatgaatgtataaggaaatataatgacttgaacttgaaggggtctttttcacttatggtcaagttttggagtctt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26875300 |
gaataagtgtactattaattattgtcatgaatgtataaggaaatataatgacttgaacttgaaggggtctttttcacttatggtcaagttttggagtctt |
26875201 |
T |
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| Q |
330 |
gttcaatgttcatggt |
345 |
Q |
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||||||| |||||||| |
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| T |
26875200 |
gttcaattttcatggt |
26875185 |
T |
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