View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_high_6 (Length: 386)
Name: NF0676_high_6
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 44838032 - 44837687
Alignment:
| Q |
29 |
aagaatcagaatgttttgttaattttccacagttggatggctatcttgtcttaaatttcatctagttctttgtatgtttcttattgttgttactttttct |
128 |
Q |
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| T |
44838032 |
aagaatcagaatgttttgttaattttccacagttggatggctatcttgtcttaaatttcatctagttctttgtatgtttcttattgttgttactttttct |
44837933 |
T |
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| Q |
129 |
caccatttttcctgttacttgatggaagatgtatgaacaagaacaattcttcaaggaacggatcagtagcatccgcgataaaaggaatgcaaaggaagaa |
228 |
Q |
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| T |
44837932 |
caccatttttcctgttacttgatggaagatgtatgaacaagaacaattcttcaaggaacggatcagtagcatccgcaataaaaggaatgcaaaggaagaa |
44837833 |
T |
|
| Q |
229 |
aattttgagaggatgcagcaggaagagcgtgagaaggttaagaagtcaagtattggtcctccttcaaatgccgaggaacggcgactcaagtaagcaattt |
328 |
Q |
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| T |
44837832 |
aattttgagaggatgcagcaggaagagcgtgagaaggttaagaagtcaagtattggtcctccttcaaatgccgaggaacggcgactcaagtaagcaattt |
44837733 |
T |
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| Q |
329 |
tctttcctttagactatgttttctattccattggaatgttgatctc |
374 |
Q |
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| T |
44837732 |
tctttcctttagactatgttttctattccattggaatgttgatctc |
44837687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 72 - 354
Target Start/End: Complemental strand, 44849659 - 44849376
Alignment:
| Q |
72 |
tcttgtcttaaattt-catctagttctttgtatgtttcttattgttgttactttttctcaccatttttcctgttacttgatggaagatgtatgaacaaga |
170 |
Q |
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||||||||||||||| | |||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44849659 |
tcttgtcttaaattttcttctatttctttatatgtttcttattgtggttactttttctcaccattttccctgttacttgatggaagatgtatgaacaaga |
44849560 |
T |
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| Q |
171 |
acaattcttcaaggaacggatcagtagcatccgcgataaaaggaatgcaaaggaagaaaattttgagaggatgcagcaggaagagcgtgagaaggttaag |
270 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
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| T |
44849559 |
acaattcttcaaggaacggatcagtagcatccacgataaaagaaatgcaaaggaagaggatttcgagaggatgcagcaggaagagcgtgagaaggtgaag |
44849460 |
T |
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| Q |
271 |
aagtcaagtattggtcctccttcaaatgc---cgaggaacggcgactcaagtaagcaattttctttcctttagactatgttttctat |
354 |
Q |
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||| ||| || ||| |||| ||||||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
44849459 |
aagacaactactgg---tcctgcaaatgcagaggaggaacggcgactcaagtatgaaattttctttccttgagactatgttttctat |
44849376 |
T |
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