View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_high_9 (Length: 271)
Name: NF0676_high_9
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 39744294 - 39744095
Alignment:
| Q |
72 |
taggagcacattttgttattcaatctaattttggggaattgattctctccggtgaaattctctcaagtttacttaattgttacatctaaatcattaaaca |
171 |
Q |
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| T |
39744294 |
taggagcacattttgttattgaatctaattttggggaattgattctctccgatgaaattctctcaagtttacttaattgttacatctaaatcattaaaca |
39744195 |
T |
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| Q |
172 |
tttatatgtatatgtcatatcatatttttagcgtttgttgaatgttacgttgttttgcattcttgctagcaagtttttgtgttttagttgagttaaatgc |
271 |
Q |
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| T |
39744194 |
tttatatgtgtctgtcatatcatgtttttagcgtttgttggaagttacattgttttgcattcttgctagcaagtttttgtgttttagttgagttaaatgc |
39744095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 17130731 - 17130665
Alignment:
| Q |
106 |
ggaattgattctctccggtgaaattctctcaagtttacttaattgttacatctaaatcattaaacatt |
173 |
Q |
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| T |
17130731 |
ggaattgattctctcaagtgaaattccctcaatttt-cttagtggttacatctaaatcattaaacatt |
17130665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 28811899 - 28811850
Alignment:
| Q |
123 |
gtgaaattctctcaagtttacttaattgttacatctaaatcattaaacat |
172 |
Q |
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| T |
28811899 |
gtgaaattctctcaagttttcttagttgttaaatctaaaccattaaacat |
28811850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 48902146 - 48902190
Alignment:
| Q |
125 |
gaaattctctcaagtttacttaattgttacatctaaatcattaaa |
169 |
Q |
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| T |
48902146 |
gaaattctctcaatttttcttaattgttacatctacatcattaaa |
48902190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 48903726 - 48903770
Alignment:
| Q |
125 |
gaaattctctcaagtttacttaattgttacatctaaatcattaaa |
169 |
Q |
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| T |
48903726 |
gaaattctctcaatttttctcaattgttacatctacatcattaaa |
48903770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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