View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_10 (Length: 411)
Name: NF0676_low_10
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 69 - 405
Target Start/End: Complemental strand, 49871266 - 49870929
Alignment:
| Q |
69 |
aatgtgtaatgatttggcggagcttttcttcctgtaaaagatatcaatataaactatcactgtatcagttaactgatatgcatattgcttccaccttctt |
168 |
Q |
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| T |
49871266 |
aatgtgtaatgacttggcggagctttcctttctgtaaaagatatcaatataaactatcactgtatcagttaactgatatgcatattgcttccaccttctt |
49871167 |
T |
|
| Q |
169 |
ttaatgtatctaatctaataataataatcaaataatttcaactgtactgatttagtatttagggcaagcacatcaactagagatgg-nnnnnnnnnnnnn |
267 |
Q |
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| T |
49871166 |
ttaatgtatctaatctaataataataatgaaataatttcaactgtactgatttagtatttagggcaagcacatcaactagagatggtttttttttttttt |
49871067 |
T |
|
| Q |
268 |
nnnngaaagaaacaattcttactttttgttgtcaatcctaccaattgtcgtttatacgaatcacctttcatgggtgtggtagacaacactggatcatcag |
367 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871066 |
tttttaaagaaacaattcttactttttgttgtcaatcttaccaattgtcgtttatacgaatcacctttcatgggtgtggtagacaacactggatcatcag |
49870967 |
T |
|
| Q |
368 |
tattcatgtccatggtagaaaatggagggaacattgct |
405 |
Q |
| |
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| T |
49870966 |
tattcatatccatggtagaaaatggagtgaacattgct |
49870929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 44204438 - 44204631
Alignment:
| Q |
58 |
actgcattttgaatgtgtaatgatttggcggagcttttcttcctgtaaaagatatcaatataaactatcactgtatcagttaactgatatgcatattgct |
157 |
Q |
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| T |
44204438 |
actgcattttgaatgtgtaatgacttggcggagctttccttcatgtaaaagatataaatataaattatcaccatttcagttaaatgatatgcatactata |
44204537 |
T |
|
| Q |
158 |
tccaccttcttttaatgtatctaatctaataataataatcaaataatttcaactgtactgatttagtatttagggcaagcacatc-aactagagatg |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| | ||| |||||| ||||||||||| |
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| T |
44204538 |
tccaccttcttttaatgtatctaatctaataataatgg---aataatttcaactgttctgattttgtatttacgacaaacacatcaaactagagatg |
44204631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 44204738 - 44204818
Alignment:
| Q |
306 |
taccaattgtcgtttatacgaatcacctttcatgggtgtggtagacaacactggatcatcagtattcatgtccatggtaga |
386 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||||||| |
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| T |
44204738 |
taccaattgttgtttatatgaatcacctttcatgggtgtggtagacagcactggatcaacaatattcatatccatggtaga |
44204818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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