View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_12 (Length: 400)

Name: NF0676_low_12
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_12
NF0676_low_12
[»] chr1 (4 HSPs)
chr1 (36-400)||(2141479-2141845)
chr1 (160-400)||(13953147-13953385)
chr1 (225-400)||(21932159-21932332)
chr1 (253-291)||(5759575-5759613)
[»] chr5 (3 HSPs)
chr5 (226-375)||(34981055-34981203)
chr5 (180-281)||(16388094-16388194)
chr5 (160-233)||(16388047-16388120)
[»] scaffold0027 (2 HSPs)
scaffold0027 (160-301)||(12783-12922)
scaffold0027 (253-290)||(12887-12924)
[»] chr8 (2 HSPs)
chr8 (180-328)||(10149952-10150100)
chr8 (57-88)||(10149398-10149429)
[»] chr2 (1 HSPs)
chr2 (165-241)||(14437655-14437731)
[»] chr4 (2 HSPs)
chr4 (198-283)||(4467179-4467264)
chr4 (253-289)||(52733512-52733548)
[»] chr7 (3 HSPs)
chr7 (68-112)||(25079371-25079415)
chr7 (7-41)||(40280620-40280654)
chr7 (7-41)||(40280792-40280826)
[»] chr3 (2 HSPs)
chr3 (228-400)||(4034053-4034223)
chr3 (255-288)||(4033997-4034030)
[»] chr6 (1 HSPs)
chr6 (253-290)||(3437803-3437840)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 36 - 400
Target Start/End: Complemental strand, 2141845 - 2141479
Alignment:
Q  36 cacctcatggaacccattacaccacactctccaaaacaaatatctaactacatcttgcaatactct--aaaacaagagtacgagnnnnnnnnnnnntgca 133  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||||  ||||||||||||| ||            ||||    
T  2141845 cacctcatggaacccattacaccatactctccaaaacaaatgtctaacaacatcttgcagtactctctaaaacaagagtacaagaaaaagaaaaaatgca 2141746  T
Q  134 tatgcttatgttcttgccaccaacattcatagttcaaaagaacgaccatactccattatatagggtataatcatttgaagctaatccactccaagaattt 233  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||    
T  2141745 tatgcttaagttgttgccaccaacattcatagttcaaaagaacgatcatacactattataaagggtataatcatttgaagctaatccactccaagaattt 2141646  T
Q  234 tcacattgtcaacatcgaaaatcatagttcaaaagaactatcatactccatcataaaagtatacttcaaatgaatctaaactactctaagaatttccaac 333  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2141645 tcacattgtcaacatcgacaatcatagttcaaaagaactatcatactccaccataaaagtatacttcacatgaatctaaactactctaagaatttccaac 2141546  T
Q  334 atgtcaaaattcatgttggaaaccttatggtgcaacttccatgtttggcaggaagctcttcaaccac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2141545 atgtcaaaattcatgttggaaaccttatggtgcaacttccatgtttggcaggaagctcttcaaccac 2141479  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 160 - 400
Target Start/End: Complemental strand, 13953385 - 13953147
Alignment:
Q  160 tcatagttcaaaagaacgaccatactccattatatagggtataatcatttgaagctaatccactccaagaattttcacattgtcaacatcgaaaatcata 259  Q
    ||||||||||||||||| | |||||| ||| ||| || |||||||||| ||||| ||| |||||  | ||||||||||| ||||  ||| || |||||||    
T  13953385 tcatagttcaaaagaactatcatacttcatcataaagagtataatcatatgaagttaaaccacttaatgaattttcacactgtcttcattgacaatcata 13953286  T
Q  260 gttcaaaagaactatcatactccatcataa-aagtatacttcaaatgaatctaaactactctaagaatttccaacatgtc-aaaattcatgttggaaacc 357  Q
     |||||||||||| |||| |||||||||||  |||||| |||||  ||| |||||   ||| |||||||||| ||||||| ||||  |||||| |||| |    
T  13953285 tttcaaaagaactgtcatgctccatcataatgagtatatttcaatcgaagctaaatcgctc-aagaatttcc-acatgtcgaaaaaacatgtt-gaaaac 13953189  T
Q  358 ttatggtgcaacttccatgtttggcaggaagctcttcaaccac 400  Q
    ||||||||||||||||||| |||| || ||| |||||||||||    
T  13953188 ttatggtgcaacttccatg-ttggtagaaagttcttcaaccac 13953147  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 400
Target Start/End: Original strand, 21932159 - 21932332
Alignment:
Q  225 caagaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatactccatcataaaagtatacttcaaatgaatctaaactactctaaga 324  Q
    |||||||||| ||||||||   | ||| |||||||||| ||| || |||||||||| |||||||| |||||||||||  ||||  | ||||| |  ||||    
T  21932159 caagaatttttacattgtctttaccgacaatcatagttaaaaggagctatcatactgcatcataagagtatacttcacttgaagttgaactatttcaaga 21932258  T
Q  325 atttccaacatgtcaaaattcatgttggaaaccttatggtgcaacttccatgtttggcaggaag-ctcttcaaccac 400  Q
    | || | ||||||| ||||||| ||| |||| ||||| |||||||||||||| |||||| |||| ||||||||||||    
T  21932259 actttc-acatgtcgaaattcaagtt-gaaaacttattgtgcaacttccatg-ttggcaagaagcctcttcaaccac 21932332  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 5759613 - 5759575
Alignment:
Q  253 aatcatagttcaaaagaactatcatactccatcataaaa 291  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  5759613 aatcatagttcaaaagaactataatactccaccataaaa 5759575  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 34981055 - 34981203
Alignment:
Q  226 aagaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatactccatcat-aaaagtatacttcaaatgaatctaaactactctaaga 324  Q
    ||||||||||| ||||||  ||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||   |||| ||||| |||| || |    
T  34981055 aagaattttcaaattgtcttcatggacaatcatagttcaaaagaactatcatactccatcataaaaaatatacttcactcgaatttaaaccactccaata 34981154  T
Q  325 atttccaacatgtcaaaattcatgttggaaaccttatggtgcaacttccat 375  Q
    |||| | ||||||||||| ||||| |  ||| ||||| |||||||||||||    
T  34981155 attttc-acatgtcaaaaatcatgct-aaaaacttatcgtgcaacttccat 34981203  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 16388194 - 16388094
Alignment:
Q  180 catactccattatatagggtataatcatttgaagctaatccactccaagaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatac 279  Q
    |||||||||  ||| || ||||||||| |||||| ||| ||||||||||| | |||||||||||  ||| || |||||||||||||||||||||||||||    
T  16388194 catactccaccataaagagtataatcacttgaagttaaaccactccaaga-tcttcacattgtcttcattgacaatcatagttcaaaagaactatcatac 16388096  T
Q  280 tc 281  Q
    ||    
T  16388095 tc 16388094  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 16388120 - 16388047
Alignment:
Q  160 tcatagttcaaaagaacgaccatactccattatatagggtataatcatttgaagctaatccactccaagaattt 233  Q
    ||||||||||||||||| | ||||||| | |||| || ||||| |||||||||||| | ||||| |||||||||    
T  16388120 tcatagttcaaaagaactatcatactctactataaagagtatagtcatttgaagcttaaccacttcaagaattt 16388047  T

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Target: scaffold0027 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 301
Target Start/End: Complemental strand, 12922 - 12783
Alignment:
Q  160 tcatagttcaaaagaacgaccatactccattatatagggtataatcatttgaagctaatccactccaagaattttcacattgtcaacatcgaaaatcata 259  Q
    ||||||||||||||||| | |||||||||  ||| || |||||  ||||||||| ||| ||||| |||||||||||||||| |   |||||| |||||||    
T  12922 tcatagttcaaaagaactatcatactccaccataaagagtatagccatttgaagttaaaccacttcaagaattttcacattattttcatcgacaatcata 12823  T
Q  260 gttcaaaagaactatcatactccatcataaaagtatacttca 301  Q
    | ||||||||||||||||| |||| || || |||||||||||    
T  12822 g-tcaaaagaactatcatattcca-caaaagagtatacttca 12783  T

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Target: scaffold0027; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 12924 - 12887
Alignment:
Q  253 aatcatagttcaaaagaactatcatactccatcataaa 290  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  12924 aatcatagttcaaaagaactatcatactccaccataaa 12887  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 328
Target Start/End: Complemental strand, 10150100 - 10149952
Alignment:
Q  180 catactccattatatagggtataatcatttgaagctaatccactccaagaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatac 279  Q
    |||||||||| ||| || || |||| | |||||| ||| ||||| ||||||||||||||||||   |||| |  ||||||||||||||||||||||||||    
T  10150100 catactccatcataaagagtgtaatgacttgaagataaaccacttcaagaattttcacattgttttcatcaacgatcatagttcaaaagaactatcatac 10150001  T
Q  280 tccatcataa-aagtatacttcaaatgaatctaaactactctaagaattt 328  Q
    ||||||| || |||||||||  |  |||| |||||| |||||||||||||    
T  10150000 tccatcacaagaagtatactctacttgaa-ctaaacaactctaagaattt 10149952  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 88
Target Start/End: Complemental strand, 10149429 - 10149398
Alignment:
Q  57 ccacactctccaaaacaaatatctaactacat 88  Q
    ||||||||||||||||||||||||||||||||    
T  10149429 ccacactctccaaaacaaatatctaactacat 10149398  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 14437655 - 14437731
Alignment:
Q  165 gttcaaaagaacgaccatactccattatatagggtataatcatttgaagctaatccactccaagaattttcacattg 241  Q
    |||||||||||| | ||||||||| || |||| |||||||||||| ||||||| ||||| |||||| ||||||||||    
T  14437655 gttcaaaagaaccatcatactccactaaatagagtataatcattttaagctaaaccacttcaagaactttcacattg 14437731  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 4467264 - 4467179
Alignment:
Q  198 gtataatcatttgaagctaatccactccaagaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatactcca 283  Q
    ||||| ||| ||||||||||  ||||||||||||| |||||||||   ||   | |||||||||||||||||||||||||||||||    
T  4467264 gtatagtcacttgaagctaaatcactccaagaattctcacattgttttcacaaacaatcatagttcaaaagaactatcatactcca 4467179  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 52733548 - 52733512
Alignment:
Q  253 aatcatagttcaaaagaactatcatactccatcataa 289  Q
    |||||||||| |||||||||||||||||||| |||||    
T  52733548 aatcatagttgaaaagaactatcatactccaccataa 52733512  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 25079415 - 25079371
Alignment:
Q  68 aaaacaaatatctaactacatcttgcaatactctaaaacaagagt 112  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    
T  25079415 aaaacaaatatctaactacatcttacaatactctaagacaagagt 25079371  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 40280654 - 40280620
Alignment:
Q  7 ctgaatacacacgattaacatctaccacgcacctc 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  40280654 ctgaatacacaccattaacatctaccacgcacctc 40280620  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 40280826 - 40280792
Alignment:
Q  7 ctgaatacacacgattaacatctaccacgcacctc 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  40280826 ctgaatacacaccattaacatctaccacgcacctc 40280792  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 400
Target Start/End: Original strand, 4034053 - 4034223
Alignment:
Q  228 gaattttcacattgtcaacatcgaaaatcatagttcaaaagaactatcatactccatcataaa-agtatacttcaaatgaatctaaactactctaagaat 326  Q
    ||||||||||| ||||  ||| || ||||||| |||||||||||| |||| |||||||||||| |||||| ||||   ||| |||||   ||| ||||||    
T  4034053 gaattttcacactgtcttcattgacaatcatatttcaaaagaactgtcatgctccatcataaagagtatatttcattcgaagctaaatcgctc-aagaat 4034151  T
Q  327 ttccaacatgtc-aaaattcatgttggaaaccttatggtgcaacttccatgtttggcaggaagctcttcaaccac 400  Q
    |||| ||||||| ||||  |||||| |||| ||||||||||| |||||||| |||| || ||| |||||||||||    
T  4034152 ttcc-acatgtcgaaaaaacatgtt-gaaaacttatggtgcagcttccatg-ttggtagaaagttcttcaaccac 4034223  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 4033997 - 4034030
Alignment:
Q  255 tcatagttcaaaagaactatcatactccatcata 288  Q
    |||||||||||||||||||||||||| |||||||    
T  4033997 tcatagttcaaaagaactatcatacttcatcata 4034030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 3437840 - 3437803
Alignment:
Q  253 aatcatagttcaaaagaactatcatactccatcataaa 290  Q
    |||||||||||||||||||||||||||| |||||||||    
T  3437840 aatcatagttcaaaagaactatcatacttcatcataaa 3437803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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