View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_16 (Length: 377)
Name: NF0676_low_16
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_16 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 45746973 - 45746640
Alignment:
| Q |
30 |
ttttttcaatttcttgccattttatttctctgttattaaactaatttggttctatgtggttgatgtgttttgttcttttattggnnnnnnnnnnnnnnnn |
129 |
Q |
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| T |
45746973 |
ttttttcaatttcttgccattttatttcttttttattaaactaatgtggttctatgtggttgatgtgttttgttcttttattggtttttttttttt---- |
45746878 |
T |
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| Q |
130 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
229 |
Q |
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| T |
45746877 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
45746778 |
T |
|
| Q |
230 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcactcgcgatctgagttgtggcattaaggtttttaatg |
329 |
Q |
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| T |
45746777 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcagtcgcgatctgagttgcggcattaaggtttttaatg |
45746678 |
T |
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| Q |
330 |
tctccacaacaaggttgcctaagctgcttttgtctgtg |
367 |
Q |
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| T |
45746677 |
tctccacaacaaggttgcctaagccgcttttgtttgtg |
45746640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 10081 - 9960
Alignment:
| Q |
130 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
229 |
Q |
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| T |
10081 |
agtttcttcaaggagtgtccacatcctgatgagaagcaaagaactgaccttagcaagaagcttggcttggcaaacaaacaagtcaagttctggtttcaga |
9982 |
T |
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| Q |
230 |
atcgtcgaacccaaatgaaggt |
251 |
Q |
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| T |
9981 |
atcggcgaactcagatgaaggt |
9960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 12327178 - 12327055
Alignment:
| Q |
130 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
229 |
Q |
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||||| || |||||||||||||| || ||||| |||||||| ||||| |||||||| || ||| | ||||||| | |||||| || || ||||| || | |
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| T |
12327178 |
agtttgtttaaggagtgtcctcacccagatgagaaacaaagattggaacttagcaaaaggctttgtttggaaacaagacaagttaagttttggttccaaa |
12327079 |
T |
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| Q |
230 |
atcgtcgaacccaaatgaaggtga |
253 |
Q |
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|||| |||| ||||||||||||| |
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| T |
12327078 |
atcgaagaacacaaatgaaggtga |
12327055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 28597614 - 28597652
Alignment:
| Q |
136 |
ttcaaggagtgtcctcatcctgatgaaaaacaaaggttg |
174 |
Q |
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| T |
28597614 |
ttcaaggagtgtcctcatcctgatgagaaacaaaggttg |
28597652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 28599429 - 28599320
Alignment:
| Q |
142 |
gagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcagaatcgtcgaaccc |
241 |
Q |
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||||||||||||||||||||||||||||| | || |||||||| || ||| | ||||||| | ||||||||| || ||||| || ||| | |||| | |
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| T |
28599429 |
gagtgtcctcatcctgatgaaaaacaaagacttgaacttagcaaaaggctttgtttggaaacaagacaagtcaagttttggttccaaaatagaagaacac |
28599330 |
T |
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| Q |
242 |
aaatgaaggt |
251 |
Q |
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|||||||||| |
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| T |
28599329 |
aaatgaaggt |
28599320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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