View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_17 (Length: 373)

Name: NF0676_low_17
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_17
NF0676_low_17
[»] chr6 (3 HSPs)
chr6 (134-344)||(17006674-17006884)
chr6 (16-99)||(17007001-17007084)
chr6 (298-344)||(14963069-14963115)
[»] chr8 (5 HSPs)
chr8 (298-345)||(15333507-15333554)
chr8 (298-345)||(15422603-15422650)
chr8 (298-345)||(15513876-15513923)
chr8 (298-344)||(18802440-18802486)
chr8 (298-344)||(14980380-14980426)
[»] chr5 (1 HSPs)
chr5 (298-344)||(21301597-21301643)
[»] chr7 (2 HSPs)
chr7 (301-344)||(48630773-48630816)
chr7 (88-131)||(48300625-48300668)
[»] chr4 (4 HSPs)
chr4 (298-344)||(35184608-35184654)
chr4 (300-344)||(4103748-4103793)
chr4 (298-344)||(3498803-3498849)
chr4 (300-338)||(47914706-47914744)
[»] chr2 (3 HSPs)
chr2 (87-131)||(236199-236243)
chr2 (87-131)||(21627544-21627588)
chr2 (87-131)||(32791393-32791437)
[»] scaffold0232 (2 HSPs)
scaffold0232 (300-338)||(21063-21101)
scaffold0232 (300-338)||(26146-26184)
[»] chr3 (1 HSPs)
chr3 (300-338)||(7190494-7190532)
[»] scaffold0256 (1 HSPs)
scaffold0256 (87-131)||(14718-14762)
[»] chr1 (1 HSPs)
chr1 (87-131)||(7389562-7389606)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 134 - 344
Target Start/End: Complemental strand, 17006884 - 17006674
Alignment:
Q  134 cattgatttaaaattatggagacaatgctttgcgatatatatcactacgctcttcatgacgagtgcgctaactgaattgcaaggaattttatcatgaaag 233  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  17006884 cattgatataaaattacggagataatgctttgcgatatatatcactacgctcttcatgacgagtgcgctaactgagttgcaaggaattttatcatgaaaa 17006785  T
Q  234 gattcaaggataggtagtaaatccatctttattcaaatgtgtacttattacggtcaagtacatgttgagtgttttgcatttcaacttgcaatagttcctg 333  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||    
T  17006784 gattcaaggacaggtagtaaatccatctttattcaaatgtgtacttattacggtcaagtgcatgttgagtgttttgcatttcaacttgcaataattcatg 17006685  T
Q  334 catatacaaca 344  Q
    |||||||||||    
T  17006684 catatacaaca 17006674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 17007084 - 17007001
Alignment:
Q  16 atacaaggaaaaagcttttgatcgattggaaaggatatgaaacataattttgttgtattagattgctaaggtggagacttcaaa 99  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  17007084 atacaaggataaagcttttgatcgattggaaaggatatgaaacataattttgttgtgttagattgctaaggtgtagacttcaaa 17007001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 14963115 - 14963069
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14963115 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 14963069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 15333554 - 15333507
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15333554 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 15333507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 15422650 - 15422603
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15422650 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 15422603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 15513923 - 15513876
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513923 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaacat 15513876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 18802486 - 18802440
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  18802486 ttgagtgttttgcatttcaacttgcaatagttcccgcatatacaaca 18802440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 14980380 - 14980426
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  14980380 ttgagtgttttgcatttcaacatgcaatagttcttgcatatacaaca 14980426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 21301597 - 21301643
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301597 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 21301643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 48630816 - 48630773
Alignment:
Q  301 agtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48630816 agtgttttgcatttcaacttgcaatagttcctgcatatacaaca 48630773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 48300668 - 48300625
Alignment:
Q  88 ggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||    
T  48300668 ggagatttcaaagcttcttctaaggtggccttgaagagggttga 48300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 35184654 - 35184608
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||    
T  35184654 ttgagtgttttgaatttcagcttgcaatagttcctgcatatacaaca 35184608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 4103793 - 4103748
Alignment:
Q  300 gagtgttttgcatttcaacttgcaa-tagttcctgcatatacaaca 344  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  4103793 gagtgttttgcatttcaacttgcaattagttcatgcatatacaaca 4103748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 3498803 - 3498849
Alignment:
Q  298 ttgagtgttttgcatttcaacttgcaatagttcctgcatatacaaca 344  Q
    ||||||| ||| ||||||| |||||||| ||||||||||||||||||    
T  3498803 ttgagtggtttccatttcagcttgcaattgttcctgcatatacaaca 3498849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 47914744 - 47914706
Alignment:
Q  300 gagtgttttgcatttcaacttgcaatagttcctgcatat 338  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  47914744 gagtgttttgcatttcaatttgcaattgttcctgcatat 47914706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 236243 - 236199
Alignment:
Q  87 tggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||    
T  236243 tggagatttcaaagcttcttctaaggtggccttgaagagggttga 236199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 21627544 - 21627588
Alignment:
Q  87 tggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||    
T  21627544 tggagatttcaaaggttcttctaaggttgccttgattagggttga 21627588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 32791393 - 32791437
Alignment:
Q  87 tggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    |||||| ||||||| |||||||||||| |||||||||||||||||    
T  32791393 tggagatttcaaagtttcttctaaggttgccttgatgagggttga 32791437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 21101 - 21063
Alignment:
Q  300 gagtgttttgcatttcaacttgcaatagttcctgcatat 338  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  21101 gagtgttttgcatttcaatttgcaattgttcctgcatat 21063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 26184 - 26146
Alignment:
Q  300 gagtgttttgcatttcaacttgcaatagttcctgcatat 338  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  26184 gagtgttttgcatttcaatttgcaattgttcctgcatat 26146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 7190532 - 7190494
Alignment:
Q  300 gagtgttttgcatttcaacttgcaatagttcctgcatat 338  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  7190532 gagtgttttgcatttcaatttgcaattgttcctgcatat 7190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 14762 - 14718
Alignment:
Q  87 tggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    |||||| |||||||||||||||||||| | |||||||| ||||||    
T  14762 tggagatttcaaaggttcttctaaggttgtcttgatgaaggttga 14718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 7389562 - 7389606
Alignment:
Q  87 tggagacttcaaaggttcttctaaggtggccttgatgagggttga 131  Q
    |||||| ||||||| |||||||||||| ||||||| |||||||||    
T  7389562 tggagatttcaaagcttcttctaaggtagccttgaagagggttga 7389606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 489 times since January 2019
Visitors: 4385