View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_20 (Length: 328)
Name: NF0676_low_20
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37844962 - 37844739
Alignment:
| Q |
1 |
gcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataat |
100 |
Q |
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| T |
37844962 |
gcattttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataat |
37844863 |
T |
|
| Q |
101 |
atagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844862 |
atagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatacaag |
37844763 |
T |
|
| Q |
201 |
gattgttgaaggtgcatatattgg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
37844762 |
gattgttgaaggtgcatatattgg |
37844739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 37837454 - 37837332
Alignment:
| Q |
17 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg |
116 |
Q |
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| T |
37837454 |
tccaaattcaaacttctttacagcacaagcctgctcattaattatggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttagg |
37837355 |
T |
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| Q |
117 |
ttctctgtagcctccaaaactag |
139 |
Q |
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| T |
37837354 |
ttctctgtagcctccaaaactag |
37837332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 37843075 - 37842947
Alignment:
| Q |
21 |
aattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttct |
120 |
Q |
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| T |
37843075 |
aattcaaacttctttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttct |
37842976 |
T |
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| Q |
121 |
ctgtagcctccaaaactaggtcctgaagg |
149 |
Q |
| |
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||||||||| ||| ||||| | ||||||| |
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| T |
37842975 |
ctgtagcctgcaacactagtttctgaagg |
37842947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 28089942 - 28089826
Alignment:
| Q |
17 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg |
116 |
Q |
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||||||||||| ||||||| |||| || | |||||||||| || ||||||||||| ||| ||||||||| ||||||| |||||| |||||||||| |
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| T |
28089942 |
tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg |
28089843 |
T |
|
| Q |
117 |
ttctctgtagcctccaa |
133 |
Q |
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| T |
28089842 |
ttctctgtagcttccaa |
28089826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 37850752 - 37850678
Alignment:
| Q |
59 |
tataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctgtagcctccaa |
133 |
Q |
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|||| ||||||||||| ||| ||||||||| | ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
37850752 |
tatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttctcagtagcctccaa |
37850678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 37831976 - 37831851
Alignment:
| Q |
4 |
ttttattgttccttccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatata |
103 |
Q |
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|||| ||||||| |||||||| | |||||||| ||||||| | || ||||||| ||| ||||||||||| ||| |||| ||||| ||||||| ||||| |
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| T |
37831976 |
ttttcttgttccacccaaattcgaccttctttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatata |
37831877 |
T |
|
| Q |
104 |
gtgatcatttaggttctctgtagcct |
129 |
Q |
| |
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| |||||||||||| ||||||| |
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| T |
37831876 |
acattgatttaggttctcagtagcct |
37831851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 36866080 - 36866040
Alignment:
| Q |
93 |
ccaataatatagtgatcatttaggttctctgtagcctccaa |
133 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
36866080 |
ccaataatatattgatcatttaggttctctgtagcttccaa |
36866040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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