View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_21 (Length: 325)

Name: NF0676_low_21
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_21
NF0676_low_21
[»] chr6 (12 HSPs)
chr6 (142-295)||(11209117-11209269)
chr6 (141-295)||(11275678-11275831)
chr6 (142-287)||(11170295-11170439)
chr6 (99-293)||(11199395-11199588)
chr6 (102-293)||(11160822-11161012)
chr6 (96-271)||(11315048-11315222)
chr6 (99-293)||(11155952-11156145)
chr6 (99-293)||(11196405-11196598)
chr6 (102-293)||(11241716-11241906)
chr6 (105-224)||(11132682-11132801)
chr6 (96-130)||(11275618-11275652)
chr6 (243-271)||(11199713-11199741)
[»] scaffold1207 (2 HSPs)
scaffold1207 (141-295)||(612-765)
scaffold1207 (96-130)||(552-586)
[»] chr7 (1 HSPs)
chr7 (96-210)||(17259920-17260034)
[»] chr8 (1 HSPs)
chr8 (159-211)||(43744558-43744610)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 11209117 - 11209269
Alignment:
Q  142 caaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagcacaacatcatgaatgttactcttgactatcccacatatctg 241  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||     
T  11209117 caaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttcactatcccac-tatctt 11209215  T
Q  242 ctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209216 ctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagat 11209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 295
Target Start/End: Original strand, 11275678 - 11275831
Alignment:
Q  141 tcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagcacaacatcatgaatgttactcttgactatcccacatatct 240  Q
    ||||||||||||  |||||| | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||  |||||||| |||||    
T  11275678 tcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccac-tatct 11275776  T
Q  241 gctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagat 295  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  11275777 gctatacacttttctacaatttccatgcactggtaaaaaagactcttgttgagat 11275831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 287
Target Start/End: Original strand, 11170295 - 11170439
Alignment:
Q  142 caaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagcacaacatcatgaatgttactcttgactatcccacatatctg 241  Q
    ||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||||     
T  11170295 caaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaattttactcttcactatcccac-tatctt 11170393  T
Q  242 ctatacacttttctacaatctccatgcactggtcaaaaagactctt 287  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  11170394 ctatacacttttctacactctccatgcaccggtcaaaaagactctt 11170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 99 - 293
Target Start/End: Original strand, 11199395 - 11199588
Alignment:
Q  99 accgcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaa 198  Q
    |||||||||||  |||||||||||||||||||  |||||||  | |||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  11199395 accgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaa 11199494  T
Q  199 gcacaacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgag 293  Q
    | ||||||||||||||| |||||||| | ||||||| ||||   ||||||||||||||||||||||||||||| ||| ||  || ||||||||||    
T  11199495 ggacaacatcatgaatgctactcttgtccatcccac-tatcaattatacacttttctacaatctccatgcacttgtcgaagtgattcttgttgag 11199588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 102 - 293
Target Start/End: Original strand, 11160822 - 11161012
Alignment:
Q  102 gcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagca 201  Q
    ||||||||  |||||||||||||||||||  |||||||  | |||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |    
T  11160822 gcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaagga 11160921  T
Q  202 caacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgag 293  Q
    |||||||||||||| |||||||| | ||||||| ||||   ||||||||||||||||||||||||||||| ||| ||  || ||||||||||    
T  11160922 caacatcatgaatgctactcttgtccatcccac-tatcaattatacacttttctacaatctccatgcacttgtcgaagtgattcttgttgag 11161012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 11315222 - 11315048
Alignment:
Q  96 gcaaccgcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaa 195  Q
    |||||||||| ||| |||||||||||||||||||||| |||| || |||||||| |||| ||| || | ||||  |||||||||||||||||||| ||||    
T  11315222 gcaaccgccttatcagcattgatgcttttgcataatttcttctcaccaaagaaaccacttaaacgtcgatgcagctttacaatcctagtagagccgccaa 11315123  T
Q  196 caagcacaacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcact 271  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||  ||| ||||||||||||||||| ||||||||    
T  11315122 caagcacaacatcatgaatgtcactcttgaccatcccac-tatcctctagacacttttctacaatcttcatgcact 11315048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 293
Target Start/End: Original strand, 11155952 - 11156145
Alignment:
Q  99 accgcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaa 198  Q
    |||||||||||  |||||||||||||||||||  |||||||  | |||||||||||||  | ||||||||||||||||||||| ||||||||||||||||    
T  11155952 accgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaa 11156051  T
Q  199 gcacaacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgag 293  Q
    | ||||||||||||||| |||||||| | ||||||| ||||   |||||||||||| |||||||||||||||| ||| ||  || ||||||||||    
T  11156052 ggacaacatcatgaatgctactcttgtccatcccac-tatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgag 11156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 293
Target Start/End: Original strand, 11196405 - 11196598
Alignment:
Q  99 accgcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaa 198  Q
    |||||||||||  |||||||||||||||||||  |||||||  | |||||||||||||  | |||||||||||||||||||||||||||||| |||||||    
T  11196405 accgcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaa 11196504  T
Q  199 gcacaacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgag 293  Q
    | ||||||||||||||| |||||||| | ||||||| ||||   |||||||||||| |||||||||||||||| ||| ||  || ||||||||||    
T  11196505 ggacaacatcatgaatgctactcttgtccatcccac-tatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgag 11196598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 293
Target Start/End: Complemental strand, 11241906 - 11241716
Alignment:
Q  102 gcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagca 201  Q
    ||||||||  |||||||||||||||||||  |||||||  | |||||||||||||  | |||||||||||||||||||||| |||||||||||||||| |    
T  11241906 gcctcatcgacattgatgcttttgcataaaagcttccccccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaagga 11241807  T
Q  202 caacatcatgaatgttactcttgactatcccacatatctgctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgag 293  Q
    |||||||||||||| |||||||| | ||||||| ||||   |||||||||||| |||||||||||||||| ||| ||  || ||||||||||    
T  11241806 caacatcatgaatgctactcttgtccatcccac-tatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgag 11241716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 11132682 - 11132801
Alignment:
Q  105 tcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagcacaa 204  Q
    ||||||||||| |||||||||||||| | ||| || ||||||||||||||||| | |||||| |||||||||||||| ||||| || |||||||| ||||    
T  11132682 tcatctgcatttatgcttttgcataactcctttccttcaaagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaa 11132781  T
Q  205 catcatgaatgttactcttg 224  Q
    ||||||||||  ||||||||    
T  11132782 catcatgaatactactcttg 11132801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 11275618 - 11275652
Alignment:
Q  96 gcaaccgcctcatctgcattgatgcttttgcataa 130  Q
    |||||||||||||||||||||||||||||||||||    
T  11275618 gcaaccgcctcatctgcattgatgcttttgcataa 11275652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 11199713 - 11199741
Alignment:
Q  243 tatacacttttctacaatctccatgcact 271  Q
    |||||||||||||||||||||||||||||    
T  11199713 tatacacttttctacaatctccatgcact 11199741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 141 - 295
Target Start/End: Original strand, 612 - 765
Alignment:
Q  141 tcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaacaagcacaacatcatgaatgttactcttgactatcccacatatct 240  Q
    ||||||||||||  ||||||   ||| |||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||||  |||||||| |||||    
T  612 tcaaagaaatcaaccaaaaggccttgaacttttacaatccttgtagagccgccaacaaggacaacatcatgaaagttactcttgtttatcccac-tatct 710  T
Q  241 gctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagat 295  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  711 gctatacagttttctacactctccatgcactggttaaaaagactcttgttgagat 765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 552 - 586
Alignment:
Q  96 gcaaccgcctcatctgcattgatgcttttgcataa 130  Q
    |||||||||||||||||||||||||||||||||||    
T  552 gcaaccgcctcatctgcattgatgcttttgcataa 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 17259920 - 17260034
Alignment:
Q  96 gcaaccgcctcatctgcattgatgcttttgcataattgcttcccatcaaagaaatcactcaaaagttgttgcacttttacaatcctagtagagccaccaa 195  Q
    ||||| |||||||| |  |||||||| |||||||||| ||| || |  ||||||||   ||| ||||| ||||||||   |||||||| ||| |||||||    
T  17259920 gcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaa 17260019  T
Q  196 caagcacaacatcat 210  Q
    |||| ||||||||||    
T  17260020 caaggacaacatcat 17260034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 43744558 - 43744610
Alignment:
Q  159 agttgttgcacttttacaatcctagtagagccaccaacaagcacaacatcatg 211  Q
    |||||||| ||||||  ||||||||  |||||||||||||| |||||||||||    
T  43744558 agttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 43744610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1343 times since January 2019
Visitors: 4413