View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_28 (Length: 296)
Name: NF0676_low_28
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 45218169 - 45218401
Alignment:
| Q |
29 |
agataaacatggctctaatcttagaaggtccatatggtaggaaaatatgcaatgattttctttctgtatatgtgatcaaagtttggtttaacaataagaa |
128 |
Q |
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| T |
45218169 |
agataaacatggctctaatcttagaaggtccatatggtaggaaaatatgcaatgattttctttctgtatatgtgatcaaagtttggtttaacaataagaa |
45218268 |
T |
|
| Q |
129 |
agaggaagtttgtaaatgatgtaatgtagcagtaaatgctgtgttatatatgtgtagaaaaagatgtcactattttatagttacaaggtcctagtatagc |
228 |
Q |
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| T |
45218269 |
agaggaagtttgtgaatgatgtaatgtagcagtaaatgctgtgttatatatgagtagaaaaagatgtcactattttatagttacaaggtcctagtatagc |
45218368 |
T |
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| Q |
229 |
aagacctaaaaatcaagacattgggtcttgtgg |
261 |
Q |
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| T |
45218369 |
aagacctaaaaatcaagacattggttcttgtgg |
45218401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 687508 - 687561
Alignment:
| Q |
196 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
249 |
Q |
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| T |
687508 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
687561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 704875 - 704928
Alignment:
| Q |
196 |
cactattttatagttacaaggtcctagtatagcaagacctaaaaatcaagacat |
249 |
Q |
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|||||||||| |||||||||||| || ||||| |||||||||||| ||||||| |
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| T |
704875 |
cactattttacagttacaaggtcttaatatagagagacctaaaaattaagacat |
704928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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