View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_29 (Length: 295)
Name: NF0676_low_29
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 9394671 - 9394467
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctat |
160 |
Q |
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| T |
9394671 |
gatgaaagtttgaaggcaaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctat |
9394572 |
T |
|
| Q |
161 |
ttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttgatg-tttagggtttatttctttgattgcatgctggcaactgtgtttttat |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
9394571 |
ttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttat |
9394472 |
T |
|
| Q |
260 |
gttat |
264 |
Q |
| |
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||||| |
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| T |
9394471 |
gttat |
9394467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 9394002 - 9393947
Alignment:
| Q |
186 |
tttttgatttcttgttgaaaatttgatgtttagggtttatttctttgattgcatgct |
242 |
Q |
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||||||||||| ||||||||||||| | |||||| || |||||||||||| |||||| |
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| T |
9394002 |
tttttgatttcatgttgaaaatttggt-tttaggattcatttctttgatttcatgct |
9393947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 1342210 - 1342082
Alignment:
| Q |
63 |
tgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattctattt |
162 |
Q |
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||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1342210 |
tgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattt |
1342111 |
T |
|
| Q |
163 |
catataatgttcataaatttctgtttttg |
191 |
Q |
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|| |||||| |||||||| || ||||| |
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| T |
1342110 |
tattaaatgttgataaatttgtgcttttg |
1342082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1342067 - 1342018
Alignment:
| Q |
192 |
atttcttgttgaaaatttgatgttt-agggtttatttctttgattgcatg |
240 |
Q |
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||||| |||||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
1342067 |
atttcatgttgaaattttggtgttttagggtttatttctttgattgcatg |
1342018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 31944183 - 31944088
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
31944183 |
gatgaaagtttcaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatt |
31944088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 35535496 - 35535401
Alignment:
| Q |
61 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| || ||||||||| || ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
35535496 |
gatgaaagtttgaaggcgtagtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttctatt |
35535401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 156
Target Start/End: Complemental strand, 5644378 - 5644293
Alignment:
| Q |
71 |
tgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||||||||| || ||||||||||| | |||||||||||||| |||||| ||||| |
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| T |
5644378 |
tgaaggcgaagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggttcctatt |
5644293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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