View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_31 (Length: 278)
Name: NF0676_low_31
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 32209950 - 32210198
Alignment:
| Q |
1 |
ttgtgttttaacatgagaaataacatattgaatattgtccattaatctaccactaatctaccacttcttacaaataatagtgttgnnnnnnnnacaaaaa |
100 |
Q |
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| T |
32209950 |
ttgtgttttaacatggtaaataacatattaaatattgtccattaatctaccactaatctaccacttcttacaaataatagtgttgtttttgt-acaaaaa |
32210048 |
T |
|
| Q |
101 |
gtaatagtgtatttttaatgatgtacataagtaatagaataaaattttggactttttaggagtaaaatatttgtgtggctcttaaaaggaaacttgagtt |
200 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32210049 |
gtaatagtgtattttttatgatgtacctaagtaatagaataaaattttggactttttaggagtaaaatatttgtgt---tcttaaaaggaaacttgagtt |
32210145 |
T |
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| Q |
201 |
aaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32210146 |
aaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
32210198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22987136 - 22986888
Alignment:
| Q |
1 |
ttgtgttttaacatgagaaataacatattgaatattgtccattaatctaccactaatctaccacttcttacaaataatagtgttgnnnnnnnnacaaaaa |
100 |
Q |
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| T |
22987136 |
ttgtgttttaacatggtaaataacatattgaatattgtccattaatctaccactaatctaccacttcttacaaataatagtgttgtttttgt-acaaaaa |
22987038 |
T |
|
| Q |
101 |
gtaatagtgtatttttaatgatgtacataagtaatagaataaaattttggactttttaggagtaaaatatttgtgtggctcttaaaaggaaacttgagtt |
200 |
Q |
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| T |
22987037 |
gtaatagtgtatttttgatgatgtacctaagtaatagaataaaattttggactttttaggagtaaaatatttgtgt---tcttaaaaggaaacttgagtt |
22986941 |
T |
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| Q |
201 |
aaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
253 |
Q |
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| T |
22986940 |
aaccatatacaaacattatgtctatgtgacacttctaaaaaagcttattctca |
22986888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 37779838 - 37780075
Alignment:
| Q |
1 |
ttgtgttttaacatgagaaataacatattgaatattgtccattaatctaccactaatctaccacttcttacaaataatagtgttgnnnnnnnnacaaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
37779838 |
ttgtgttttaacatgataaataacatattgaatattgtccattaatctaccact-----------tcttacaaataatagtgttgtttttgt-acaaaaa |
37779925 |
T |
|
| Q |
101 |
gtaatagtgtatttttaatgatgtacataagtaatagaataaaattttggactttttaggagtaaaatatttgtgtggctcttaaaaggaaacttgagtt |
200 |
Q |
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|||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37779926 |
gtaatagtgtatttttgatgatgtacctaactaatagaataaaattttggactttttaggagtaaaatatttgtgt---tcttaaaaggaaacttgagtt |
37780022 |
T |
|
| Q |
201 |
aaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37780023 |
aaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
37780075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 26340968 - 26341036
Alignment:
| Q |
185 |
aaaggaaacttgagttaaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
253 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26340968 |
aaaggaaacttgagttaaccatatgcaagtattatgtctatgtggcacttctaaaagagcttattctca |
26341036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 53692770 - 53692702
Alignment:
| Q |
185 |
aaaggaaacttgagttaaccatatgcaagcattatgtctatgtgacacttctaaaagagcttattctca |
253 |
Q |
| |
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|||| |||||||||||||| ||||||||| |||||||| | ||| |||||||||||||||||||||||| |
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| T |
53692770 |
aaagaaaacttgagttaactatatgcaagtattatgtccaagtggcacttctaaaagagcttattctca |
53692702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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