View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_32 (Length: 276)
Name: NF0676_low_32
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 40280846 - 40280654
Alignment:
| Q |
47 |
gccacctaggcctccaccatctgaatacacacgattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaag |
146 |
Q |
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| T |
40280846 |
gccacctaggcctccaccatctgaatacacaccattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaag |
40280747 |
T |
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| Q |
147 |
catgtggatccatcatggcttacactttcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccc |
239 |
Q |
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| T |
40280746 |
catgtggatccatcatggcttacactctcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccc |
40280654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 40280654 - 40280478
Alignment:
| Q |
67 |
ctgaatacacacgattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
166 |
Q |
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| T |
40280654 |
ctgaatacacaccattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
40280555 |
T |
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| Q |
167 |
tacactttcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcacccccta |
243 |
Q |
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| T |
40280554 |
tacactctcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcacccccta |
40280478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 40457728 - 40457872
Alignment:
| Q |
99 |
ctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactttcacagccatcttcatcaccaccac |
198 |
Q |
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||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
40457728 |
ctctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggatccatcttggcttacactctcacagccatcttcatcaccaccac |
40457827 |
T |
|
| Q |
199 |
ttcctaagcctttcccatctgaatggacaccatcatcacccccta |
243 |
Q |
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| | ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
40457828 |
tccataagcctttaccatctgaatacacaccatcatcacccccta |
40457872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 40285483 - 40285424
Alignment:
| Q |
181 |
catcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcacccc |
240 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||| ||||||||| |||||| |
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| T |
40285483 |
catcttcatcaccaccactccctaagcatttaccatctgaatacacaccatcaacacccc |
40285424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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