View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_35 (Length: 256)
Name: NF0676_low_35
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 3376768 - 3376552
Alignment:
| Q |
29 |
cgaacaacaaaatgcactattctttcttgatacttcttcacaagcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttagctacctgg |
128 |
Q |
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| T |
3376768 |
cgaacaacaaaatgcactattctttcttgatactccttcacaagcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttggctacctgg |
3376669 |
T |
|
| Q |
129 |
attctccaactcgaacttagcagcttcgctgatggagctagatgttggcttgggaggtatcgccaagcttaaagacccgtctggactgtactttctaggg |
228 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3376668 |
attctccaactcgaacttagcagcttcgccaatggagctagattttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtactttctaggg |
3376569 |
T |
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| Q |
229 |
cgaccccttttcttctt |
245 |
Q |
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||||||||||||||||| |
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| T |
3376568 |
cgaccccttttcttctt |
3376552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 3401741 - 3401616
Alignment:
| Q |
120 |
gctacctggattctccaactcgaacttagcagcttcgctgatggagctagatgttggcttgggaggtatcgccaagcttaaagacccgtctggactgtac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3401741 |
gctacctggattctccaactcgaacttagcagcttcgccgatggagctagatgttggcttgggaggtatcgccaagcttaaagacccgtctggtctgtac |
3401642 |
T |
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| Q |
220 |
tttctagggcgaccccttttcttctt |
245 |
Q |
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| T |
3401641 |
tttctagggcggccccttttcttctt |
3401616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 3368142 - 3367971
Alignment:
| Q |
52 |
ttcttgatacttcttcacaagcat-tcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttagctacctggattctccaactcgaacttagca |
150 |
Q |
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||||||||||| |||||||||||| |||||||||| | | ||| ||||| |||||||||||||||||| | |||||| |||||||||| | || || |
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| T |
3368142 |
ttcttgatactccttcacaagcatctcaatcaagacacgtacatgatcacaaagaaagagaatttcttggttacctgtattctccaacgtgcttttgcca |
3368043 |
T |
|
| Q |
151 |
gcttcgctgatggagctagatgttggcttgggaggtatcgccaagcttaaagacccgtctggactgtacttt |
222 |
Q |
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|||| || |||||||||||||||||||| ||||| ||| || || | ||||||| |||||| |||||||| |
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| T |
3368042 |
gctttactaatggagctagatgttggcttcggaggcatcaccgagttcaaagacctgtctggtttgtacttt |
3367971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 3371875 - 3371995
Alignment:
| Q |
55 |
ttgatacttcttcacaagcattcaatcaagaaatgcacaagatcaaaaagaaagagaatttcttagctacctggattctccaactcgaacttagcagctt |
154 |
Q |
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|||||||| || ||||| ||||||||||||||| ||||| ||| | ||||||| |||||||| ||||||| ||||||||||| || || |||| || |
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| T |
3371875 |
ttgatactactgcacaaccattcaatcaagaaacgcacatgat----gacaaagagagtttcttagttacctggtttctccaactcaaatttggcagatt |
3371970 |
T |
|
| Q |
155 |
cgctgatggagctagatgttggctt |
179 |
Q |
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|| |||||||||||||||||||| |
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| T |
3371971 |
tgccaatggagctagatgttggctt |
3371995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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