View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_36 (Length: 251)
Name: NF0676_low_36
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_36 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 49870622 - 49870859
Alignment:
| Q |
14 |
atatcatattcgttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaag |
113 |
Q |
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| T |
49870622 |
atatcatattcgttgtggttagtaatttgtttgaaagaatgagagcaaatctaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaag |
49870721 |
T |
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| Q |
114 |
aatatgtgattcatttgaaacaaggaaagaattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaat |
213 |
Q |
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| T |
49870722 |
aatatgtgattcatttgaaacaaggaaataattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaat |
49870821 |
T |
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| Q |
214 |
cacaaacaatcaatgaaggttataatctttgagaaacc |
251 |
Q |
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| T |
49870822 |
cacaaacaatttgtgaaggttataatctttgagaaacc |
49870859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 17982610 - 17982512
Alignment:
| Q |
22 |
ttcgttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaattagcattgaagaaaagaatatgtg |
121 |
Q |
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| T |
17982610 |
ttcgttgcggttagtaatttgtttgaaagattgagagtaaatc-aattttggtcaagttcaaggaaatgatttaatatgcattgaagaaaagaatatgtg |
17982512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 20606628 - 20606557
Alignment:
| Q |
25 |
gttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaa |
96 |
Q |
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| T |
20606628 |
gttgcggttagtaatttgtttgaaagaatgagagtaaatccaattttggccaagttcaaggaaataatttaa |
20606557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 44205065 - 44204974
Alignment:
| Q |
132 |
aacaaggaaagaattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaatcacaaacaatc |
224 |
Q |
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| T |
44205065 |
aacaagcaaagaattgttcaatgtgtaattcatttgaaactgttaagtataattaagat-atgtgcaaccaaatacataaatcacaaacaatc |
44204974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 44205223 - 44205109
Alignment:
| Q |
14 |
atatcatattcgttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaat-ta---gcattgaaga |
109 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
44205223 |
atatcatctttgttgtggttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaatatatatgaattgaaga |
44205124 |
T |
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| Q |
110 |
aaagaatatgtgatt |
124 |
Q |
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| T |
44205123 |
acagaatatgtgatt |
44205109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 184199 - 184128
Alignment:
| Q |
25 |
gttgtggttagtaatttgtttgaaagaatgagagcaaatccaattatggtcaagttcaaggaaatgatttaa |
96 |
Q |
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| T |
184199 |
gttgcggttagtaatttgtttgaaagaatgagagcaaatccaattttggccaagttcaaggaaatgatttaa |
184128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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