View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0676_low_44 (Length: 206)
Name: NF0676_low_44
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_44 |
 | |
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| [»] chr8 (3 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
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| [»] chr2 (11 HSPs) |
| |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0214 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23132510 - 23132715
Alignment:
| Q |
1 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23132510 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
23132609 |
T |
|
| Q |
101 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23132610 |
gggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg |
23132709 |
T |
|
| Q |
201 |
catgat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
23132710 |
catgat |
23132715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||||| ||||||||| || ||||| ||||| ||||| | |
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|
| T |
26587380 |
gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc |
26587281 |
T |
|
| Q |
167 |
aaag |
170 |
Q |
| |
|
|||| |
|
|
| T |
26587280 |
aaag |
26587277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 14760096 - 14760016
Alignment:
| Q |
49 |
gctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca |
129 |
Q |
| |
|
||||| ||||||||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| || |||||| |
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|
| T |
14760096 |
gctgaatttatagcaatagagagcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca |
14760016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11897370 - 11897165
Alignment:
| Q |
1 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11897370 |
ggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagcttttccatgcaaaggatgaaaagataag |
11897271 |
T |
|
| Q |
101 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11897270 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagtaactaggagaagctacgcaatg |
11897171 |
T |
|
| Q |
201 |
catgat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
11897170 |
catgat |
11897165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 26432623 - 26432801
Alignment:
| Q |
1 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
100 |
Q |
| |
|
||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| |||||||| || |||||||||||||||| |||||| ||||||| |
|
|
| T |
26432623 |
ggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgcaaatgatgaagagataag |
26432722 |
T |
|
| Q |
101 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagta |
179 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26432723 |
gggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagagta |
26432801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
151 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| |
|
|
| T |
23424654 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca |
23424570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 15473439 - 15473540
Alignment:
| Q |
66 |
tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattc |
165 |
Q |
| |
|
|||||| |||||||||||||| ||||| | || || || | || |||||||||||||||||||||| ||||||||||| |||| ||||| |||||| |
|
|
| T |
15473439 |
tgaaagtttttccatgcaaagtatgaattggtatggagaaagtgggtcaccttgtcggaggccatgagtgggcttgaaaggaggcattttgtttccattc |
15473538 |
T |
|
| Q |
166 |
ca |
167 |
Q |
| |
|
|| |
|
|
| T |
15473539 |
ca |
15473540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 49149802 - 49149860
Alignment:
| Q |
109 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| | |||||| |
|
|
| T |
49149802 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttacaattcca |
49149860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 14653605 - 14653810
Alignment:
| Q |
1 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
14653605 |
ggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagcttttccatgcaaaggatgaaaaaataag |
14653704 |
T |
|
| Q |
101 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14653705 |
gggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg |
14653804 |
T |
|
| Q |
201 |
catgat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
14653805 |
catgat |
14653810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
| Q |
58 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
157 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||||| ||||||||||| |||| ||||| |
|
|
| T |
16322611 |
atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt |
16322512 |
T |
|
| Q |
158 |
tcccattcca |
167 |
Q |
| |
|
| |||||||| |
|
|
| T |
16322511 |
ttccattcca |
16322502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 35135219 - 35135313
Alignment:
| Q |
73 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| |||||||| |
|
|
| T |
35135219 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca |
35135313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 40328325 - 40328231
Alignment:
| Q |
73 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||||| |||||||||||| | | |||||| |||||||| |
|
|
| T |
40328325 |
ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattcca |
40328231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 26791471 - 26791335
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaa |
169 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||||| ||||| |||||| |||||| | || |||||||||| |
|
|
| T |
26791471 |
agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa |
26791372 |
T |
|
| Q |
170 |
gtatagagtaactcggagaagctacgcaatgcatgat |
206 |
Q |
| |
|
| |||||| | || | |||| |||||||||||||| |
|
|
| T |
26791371 |
gaatagagaagctggatgaagtaacgcaatgcatgat |
26791335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 3779048 - 3779142
Alignment:
| Q |
73 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| | | |||||| |||||||| |
|
|
| T |
3779048 |
ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca |
3779142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || ||||| ||| ||||| |||||||| |
|
|
| T |
573342 |
agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca |
573245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 177649 - 177549
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaa |
169 |
Q |
| |
|
|||||||||||||| | |||||| || ||||| ||||| || |||||||||| || ||||||| |||||||| ||| ||| | ||||| |||||||||| |
|
|
| T |
177649 |
agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa |
177550 |
T |
|
| Q |
170 |
g |
170 |
Q |
| |
|
| |
|
|
| T |
177549 |
g |
177549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 19265551 - 19265469
Alignment:
| Q |
85 |
aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||| || || ||||||| |||||||||||| | | |||||| |||||||| |
|
|
| T |
19265551 |
aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca |
19265469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
| Q |
65 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
151 |
Q |
| |
|
||||||||||||||||||| || || || |||||||| || | || |||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
42403209 |
ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca |
42403295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
35062956 |
agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc |
35063007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 20285071 - 20284866
Alignment:
| Q |
1 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20285071 |
ggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataag |
20284972 |
T |
|
| Q |
101 |
gggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatg |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20284971 |
gggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagagtaactaggagaagctacgcaatg |
20284872 |
T |
|
| Q |
201 |
catgat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
20284871 |
catgat |
20284866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 50236550 - 50236659
Alignment:
| Q |
58 |
atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt |
157 |
Q |
| |
|
|||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
50236550 |
atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt |
50236649 |
T |
|
| Q |
158 |
tcccattcca |
167 |
Q |
| |
|
|||| ||||| |
|
|
| T |
50236650 |
tcccgttcca |
50236659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 50452048 - 50451951
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||||| |
|
|
| T |
50452048 |
agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca |
50451951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
| Q |
109 |
ggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||| ||||||| ||||| |||||||| |
|
|
| T |
23465461 |
ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca |
23465403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| | |||| |||||||| |
|
|
| T |
76057 |
agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc |
75967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaa |
169 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || || | ||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
32874457 |
agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa |
32874556 |
T |
|
| Q |
170 |
gtataga |
176 |
Q |
| |
|
| ||||| |
|
|
| T |
32874557 |
ggataga |
32874563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 7817285 - 7817188
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||||| ||||||||||| || | |||||||||||||| |
|
|
| T |
7817285 |
agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattcca |
7817188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 6641008 - 6641089
Alignment:
| Q |
65 |
ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaagg |
146 |
Q |
| |
|
||||||| ||||||||||| | ||||| || || || || | ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
6641008 |
ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaagg |
6641089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 54477407 - 54477513
Alignment:
| Q |
73 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta |
172 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | ||||||||||| || | |||||| ||||||||||| | |
|
|
| T |
54477407 |
ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga |
54477506 |
T |
|
| Q |
173 |
tagagta |
179 |
Q |
| |
|
|| |||| |
|
|
| T |
54477507 |
taaagta |
54477513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||| |||||||| |||| ||||||||| ||||| || ||||| ||||||| ||||||||| |||||||| ||||| ||| |||||||||||||| |
|
|
| T |
14307936 |
gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc |
14307837 |
T |
|
| Q |
167 |
aaagtatagag |
177 |
Q |
| |
|
|||| |||||| |
|
|
| T |
14307836 |
aaagaatagag |
14307826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 46784469 - 46784572
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||| |||| ||||||||||||||| || || || || | ||||||||||||| |||||||||| ||| |||||||||||||| || || ||||||| |
|
|
| T |
46784469 |
gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc |
46784568 |
T |
|
| Q |
167 |
aaag |
170 |
Q |
| |
|
|||| |
|
|
| T |
46784569 |
aaag |
46784572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||| |||||||| || | ||||||||| ||||| || ||||| ||||||| ||||||||| |||||||| ||||| ||| |||||||||||||| |
|
|
| T |
14291887 |
gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc |
14291788 |
T |
|
| Q |
167 |
aaagtatagag |
177 |
Q |
| |
|
|||| |||||| |
|
|
| T |
14291787 |
aaagaatagag |
14291777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||||| |
|
|
| T |
3881868 |
agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca |
3881771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 24893833 - 24893933
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| ||||| ||||||| |
|
|
| T |
24893833 |
gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc |
24893932 |
T |
|
| Q |
167 |
a |
167 |
Q |
| |
|
| |
|
|
| T |
24893933 |
a |
24893933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
| Q |
61 |
gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcc |
160 |
Q |
| |
|
||||||||||| |||||||| || | |||||| |||||||| || | ||||||||||| ||||| |||||| ||||||||| |||| |||||||| | |
|
|
| T |
13599745 |
gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac |
13599646 |
T |
|
| Q |
161 |
cattcca |
167 |
Q |
| |
|
||||||| |
|
|
| T |
13599645 |
cattcca |
13599639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggca |
151 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| | ||||||||||| |||| |
|
|
| T |
24990660 |
gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca |
24990744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 27852952 - 27853059
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaa |
169 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| || || || || ||||||| || ||||||||||||||||||| |||| ||||| || ||||||| |
|
|
| T |
27852952 |
agcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggcattttgtttccgttccaaa |
27853051 |
T |
|
| Q |
170 |
gtatagag |
177 |
Q |
| |
|
| |||||| |
|
|
| T |
27853052 |
gaatagag |
27853059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
| Q |
110 |
gatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcca |
167 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||||| ||||||||||| |||||||| |
|
|
| T |
35233599 |
gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca |
35233542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
| Q |
64 |
gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccat |
163 |
Q |
| |
|
||||| || |||||||| || | |||||| |||||||| || | |||||||||||||| || ||||||| ||| |||||| ||||||| ||||| |||| |
|
|
| T |
16769956 |
gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat |
16770055 |
T |
|
| Q |
164 |
tcca |
167 |
Q |
| |
|
|||| |
|
|
| T |
16770056 |
tcca |
16770059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 1353794 - 1353927
Alignment:
| Q |
73 |
ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta |
172 |
Q |
| |
|
|||||||| ||||| ||||||||||| || || | |||||||||||| ||||||||||| ||||||||| || | || ||| ||||||||| | || | |
|
|
| T |
1353794 |
ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagagga |
1353893 |
T |
|
| Q |
173 |
tagagtaactcggagaagctacgcaatgcatgat |
206 |
Q |
| |
|
||||| || | | || || |||||||||||||| |
|
|
| T |
1353894 |
tagagaaagtggaggaggcaacgcaatgcatgat |
1353927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 1579159 - 1579295
Alignment:
| Q |
70 |
agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaa |
169 |
Q |
| |
|
||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||||| ||| | || || ||||||||||| | |||| | | |
|
|
| T |
1579159 |
agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga |
1579258 |
T |
|
| Q |
170 |
gtatagagtaactcggagaagctacgcaatgcatgat |
206 |
Q |
| |
|
| |||||| || | | ||||| || ||||||||||| |
|
|
| T |
1579259 |
gaatagagaaagttgaagaagaaacacaatgcatgat |
1579295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 9120 - 9010
Alignment:
| Q |
67 |
gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccattcc |
166 |
Q |
| |
|
||||| || ||||||||||| || ||||| || ||||| | |||||||| || ||||||||||||||||| |||||| |||| | | || ||||||| |
|
|
| T |
9120 |
gaaagtttctccatgcaaagtataaaaaggtacggggaaagtggatcaccctgcgtgaggccatgagaaggctcgaaaggaggcagcctattaccattcc |
9021 |
T |
|
| Q |
167 |
aaagtatagag |
177 |
Q |
| |
|
|||| |||||| |
|
|
| T |
9020 |
aaagaatagag |
9010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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